View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_high_1 (Length: 792)
Name: NF16706_high_1
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 237 - 780
Target Start/End: Original strand, 34797053 - 34797596
Alignment:
| Q |
237 |
tactgttttggtctctatttcagctttgatatgcttaagaacaacccggatgttgactgctctagggctaaagcaaaggatttttggtcggctgagactt |
336 |
Q |
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| T |
34797053 |
tactgttttggtctctatttcagctttgatatgcttaagaacaacccggatgttgactgctctagggctaaagcaaaggatttttggtcggctgagactt |
34797152 |
T |
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| Q |
337 |
atgatgtaaagcttccttggaaggacttggctgtaggccgtgtttgtcatggacgtggtcgtgggtgggattccctaagaagaaatgaaagcatgcctga |
436 |
Q |
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| T |
34797153 |
atgatgtaaagcttccttggaaggacttggctgtaggccgtgtttgtcatggacgtggtcgtgggtgggattccctaagaagaaatgaaagcatgcctga |
34797252 |
T |
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| Q |
437 |
acatctggtggacgcgtgtaagaggtgtgctcgagcatttataagggctgaatttcaggtatgctttgttccacctataactattcaggcaaattttagg |
536 |
Q |
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| T |
34797253 |
acatctagtggacgcgtgtaagaggtgtgctcgagcatttataagggccgaatttcaggtatgctttgttccacctataactattcaggcaaattttagg |
34797352 |
T |
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| Q |
537 |
tatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactagattaaatgaatgctttgattttatatcaattataagatagaagg |
636 |
Q |
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| T |
34797353 |
tatgctttgagaatgattatctattgatcattgtcattggcttggctgtctactatattaaatgaatgctttgattttatatcaattataagatagaagg |
34797452 |
T |
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| Q |
637 |
tgatgctatcnnnnnnntttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagnnnnnnnnccataggttatgtattt |
736 |
Q |
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| T |
34797453 |
tgatgctcacaaaaaaatttatcacctcttgcctactaaattaaacacaaatgaaactaacattggtgcgataagaaaaaaaaccataggttatgtattt |
34797552 |
T |
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| Q |
737 |
attgcacctataaactgaggaagggagaaaaagcataattgttc |
780 |
Q |
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| T |
34797553 |
attgcacctataaactgaggaagggagaaaaagcataattgttc |
34797596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 34796832 - 34796986
Alignment:
| Q |
16 |
cctataagaaagaaaggatggagaatacctgtttttgcagctatgccgatggatggtgtgcttcttgcaagcgtaaatatgaagaggaagaagaggaacg |
115 |
Q |
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| T |
34796832 |
cctataagaaagaaaggatggagaatacctgtttttgcagctatgccgatggatggtgtgcttcttgcaagcgtaaatatgaagaggaagaagaggaacg |
34796931 |
T |
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| Q |
116 |
tgcaaagccctggcagcaaatcaaacaggaagcaattgaagaacttgcttttacg |
170 |
Q |
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| T |
34796932 |
tgcaaagccctggcagcaaatcaaacaggaagcaattgaagaacttgcttttacg |
34796986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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