View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_high_10 (Length: 353)
Name: NF16706_high_10
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 453824 - 454061
Alignment:
| Q |
11 |
cagagagaaccacaccagacagaagtatcagcaaaataaaaggtttgaacttcatcttttttaattagtaaactgaacaaaacaatacttgagaaaagga |
110 |
Q |
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| T |
453824 |
cagagagaaccacaccagacagaagtatcagcaaaataaaaggtttgaacttcatcttttttaattagtaaactgaacacaacaatacttgagaaaagga |
453923 |
T |
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| Q |
111 |
tgaaagaaaatgttcttacaacactcttatttatagtgcatgaagagcatcatcaaattaaatgctatgaataagtggggcctagtcactaacactaatt |
210 |
Q |
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| T |
453924 |
tgaaagaaaatgttcttacaacactcttatttatagtgcatgaagagcatcatcaaattaaatgctatgaataagtggggcctagtcactaacaataatt |
454023 |
T |
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| Q |
211 |
tttgtcacttatcatatttttaggttattaatcgtttt |
248 |
Q |
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| T |
454024 |
tttgtcacttatcatatttttaggttattaatcgtttt |
454061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 441483 - 441781
Alignment:
| Q |
15 |
gagaaccacaccagacagaagtatcagcaaaataaaaggtttgaacttcatcttttttaattagtaaactgaacaaaacaatacttgagaaaaggatgaa |
114 |
Q |
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| T |
441483 |
gagaaccacaccagacagaagtatcagcaaaacaaaaggtttgaaattcatctttgttaattagttaacag----------tacttgagaaaaggatgag |
441572 |
T |
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| Q |
115 |
agaaaatgttcttacaacactcttatttatagtgcatgaagagcatcatcaaattaaatgctatgaataagtggggcctagtcactaacactaatttttg |
214 |
Q |
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| T |
441573 |
agaaaatgctctaacaacacccatatttatagtgcatgaagagcatcatcaaattaaatgctataagtaaggtggacctactcattaacactaatttttg |
441672 |
T |
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| Q |
215 |
tc-acttatcatatttttaggttattaatcgttttc------atttcaaccatattaattttaagtcaatttc--cttccatattacgtgccactaccaa |
305 |
Q |
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| T |
441673 |
tctccttatcatattttcacgttattaattgttttcatttcaatttcaaccatattaattttaagtcagtttcatattccagattatctgccactaccaa |
441772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 454104 - 454201
Alignment:
| Q |
237 |
attaatcgttttcatttcaaccatattaattttaagtcaatttccttccatattacgtgccactaccaagtgtgaacttttaaattttttctctataa |
334 |
Q |
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| T |
454104 |
attaatcgttttcatttccaccatattaattttaagtcaatttccttccatattacgtgccactaccaagtgtgaactttgaaattttttctctataa |
454201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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