View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_high_14 (Length: 286)
Name: NF16706_high_14
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 4473335 - 4473616
Alignment:
| Q |
1 |
agttttcgagggtttgaataaattctcaatattcaatcgatattgttataatattctttaaatttctttnnnnnnn---tctatttttctttcactctcg |
97 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
4473335 |
agttttcgagagtttgaataaattctcaatattcaattgatattgttataatattctttaaatttcttaaaaaaaaaattctatttttctttcactttca |
4473434 |
T |
|
| Q |
98 |
ttccccaaaattctcccctcccttttccccctcgagactcccaaagagagcttagttattgtgccaaactagaacaaatcacgataaccattcaaaacgt |
197 |
Q |
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||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4473435 |
ttccccaaagttctcccctcccttt-ccccctcgagactctcaaagagagcttagttattgtgccaaactagaacaaatcacgataaccattcaaaacgt |
4473533 |
T |
|
| Q |
198 |
ttacttatcttcatgtaaaagaaaataacaaaaatatacatgaatggccacagaaacatgataaataaatatgcagatagata |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4473534 |
ttacttatcttcatgtaaaagaaaataacaaaaatatacatgaatggccacagaaacatgataaataaatatgcagatagata |
4473616 |
T |
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