View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_high_16 (Length: 231)
Name: NF16706_high_16
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 33722505 - 33722314
Alignment:
| Q |
18 |
atgaagagaaaactaaaatttatttcatccatgatctaaatcaaaattgttgtacgtttaatttgaatgaaaatataatactcttaagagaaaactatga |
117 |
Q |
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| T |
33722505 |
atgaagagaaaactaaaatttatttcatcaatgatctaaatcaaaattgttgtacgtttaatttgaatgaaaatataatactcttaagagaaaactatga |
33722406 |
T |
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| Q |
118 |
caagctaagagcaatggtattgcagctcaacctgcctaggacttcactataaagctggatgaaaactagttggtgcatttggtggaatctgt |
209 |
Q |
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| T |
33722405 |
caagctaagagcaatggtattgcagctcaacctgcctaggaattcactataaagctgtatgaaaactagttggtgcatttggtggaatctgt |
33722314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 33710483 - 33710294
Alignment:
| Q |
18 |
atgaagagaaaactaaaatttatttcatccatgatctaaatcaaaattgttgtacgtttaatttgaatgaaaatataatactcttaagagaaaactatga |
117 |
Q |
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||||| ||||||||||| |||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
33710483 |
atgaaaagaaaactaaa-tttatt-catcaatgatctaaatcaaaattgtcgtacatttaatttgaatgaaaatatattactcttcatggaaaactatga |
33710386 |
T |
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| Q |
118 |
caagctaagagcaatggtattgcagctcaacctgcctaggacttcactataaagctggatgaaaactagttggtgcatttggtggaatctgt |
209 |
Q |
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| T |
33710385 |
caagctaagagcaatggaattgcagctcaagctgcccaggaattcactataaagctggatgaaaactatttggtgcatttcgtggaatctgt |
33710294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 10190934 - 10190906
Alignment:
| Q |
177 |
tgaaaactagttggtgcatttggtggaat |
205 |
Q |
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| T |
10190934 |
tgaaaactagttggtgcatttggtggaat |
10190906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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