View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16706_high_2 (Length: 647)

Name: NF16706_high_2
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16706_high_2
NF16706_high_2
[»] chr2 (1 HSPs)
chr2 (1-630)||(30385783-30386400)


Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Complemental strand, 30386400 - 30385783
Alignment:
Q  1 atattaatgacaaaattttgtcctttggattttagnnnnnnnngtattgatctatgtgtatattcgaaggtttatagaaagattatcattttagttctat 100  Q
    |||||||||| ||||||||||| ||||||||||||        |||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||    
T  30386400 atattaatgataaaattttgtc-tttggattttagaaaaaaa-gtattgatctatgtgtatattcaaagtattatagaaagattatcattttagttcaat 30386303  T
Q  101 atgaaggtgatattttccttgcaacttatgatcttagtctactacatacatacatgagactaagaagttttttcnnnnnnnnctttgaaatgaaagatat 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||        ||||||||||||||||||    
T  30386302 atgaagctgatattttccttgcaacttatgatcttagtctactacat--------gagactaagaagttttttcaaagaa--ctttgaaatgaaagatat 30386213  T
Q  201 gagtgagacaattaatggtgatgtaatataaatattttgtaatagagcacaatggttgttatatttgtctcataaagcaatatcgataaagtgtttgaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30386212 gagtgagacaattaatggtgatgtaatataaatattttgtaatagggcacaatggttgttatatttgtctcataaagcaatatcgataaagtgtttgaga 30386113  T
Q  301 gattaagaaaacatctcaagttccaataagaaaggagacaaatttagccttatgcactgttcaaagaatgaattggaacaaaatagttgaatgttcagat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||  |||||| |||| ||    
T  30386112 gattaagaaaacatctcaagttccaataagaaaggagacaaatttagtcctatgcactgttcaaagaatgatttggaacaaaatgattgaatattcaaat 30386013  T
Q  401 ttaaaattttctggttgttgatacaggaaagtgaacatttagttatgtgtatcttttcgttagggttgatataatggaagagtgtgaaacagtatgctat 500  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30386012 ttaaatttttctggttgttgatacaggaaagtgaacatttagttatgtgtatcttttcgttagggttgatataatggaagagtgtgaaacagtatgctat 30385913  T
Q  501 cgttggatctacaatgaatgctgaatttgtgggatgctttgaggccacactttagacaaattgactgggaaacttcatttcagaactttgattagtcgac 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30385912 cgttggatctacaatgaatgctgaatttgtgggatgctttgaggccacactttagacaaattgactgggaaacttcatttcagaactttgactagtcgac 30385813  T
Q  601 attattgccatgtcgctgaaaacttattat 630  Q
    ||||||||||||||||||||||||||||||    
T  30385812 attattgccatgtcgctgaaaacttattat 30385783  T

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