View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_high_3 (Length: 593)
Name: NF16706_high_3
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 22 - 576
Target Start/End: Complemental strand, 47637375 - 47636830
Alignment:
| Q |
22 |
gaaacaaccacaacacaaaccttggagatgaggaaaagtgggaaagagcaaaaacaaaacaagatagtgagaataataacaacaccaataagagtgttgg |
121 |
Q |
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| T |
47637375 |
gaaacaaccacaacacaaaccttggagatgaggaaaagtgggaaagagcaaaaacaaaacaagatagtgagaataataacaacaccaataagagtgttgg |
47637276 |
T |
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| Q |
122 |
gaatagcaaaagacatgtacgtaagaagcataacaaagtgcggtaacaacatgaattatagcaatcctactggaagattcgagaatttaccgcgaagtta |
221 |
Q |
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| T |
47637275 |
gaatagcaaaagacatgtacgtaagaagcataacaaagtgcggtaacaacatgaattatagcaatcctactggaagattcgagaatttaccgcgaagtta |
47637176 |
T |
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| Q |
222 |
cagcgcggtaacttctcgatcaggtggtggcggtgataacgaagattttgctgagttaatgagagcagcttcagctaggactttgggtaaccgaattgat |
321 |
Q |
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| T |
47637175 |
cagcgcggtaacttctcgatcaggtggtggtggtgataacgaagattttgctgagttaatgagagcagcttcagctaggactttgggtaaccgaattgat |
47637076 |
T |
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| Q |
322 |
atggatttggttctnnnnnnnnnnnnnnnnnnnntagaaccaaaacccgtttcttcaaacgggttacccaaatccgttagtgttggtatgggtcggattg |
421 |
Q |
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| T |
47637075 |
atggatttggttct---------caaacaacaactagaaccaaaacccgtttcttcaaacgggttacccaaatccgttagtgttggtatgggtcggattg |
47636985 |
T |
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| Q |
422 |
atgaggaaaagcctagtgatgatgatattgctgaaggtgatgttcctgtggtggcaaattcttatccaagaagtagaagctatgctgttggaaagagaaa |
521 |
Q |
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| T |
47636984 |
atgaggaaaagcctagtgatgatgatattgctgaaggtgatgttcctgtggtggcaaattcttatccaagaagtagaagctatgctgttggaaagagaag |
47636885 |
T |
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| Q |
522 |
tgttgttttgtagaatcattaaaattaatctctcttgagaattgatgatgatttc |
576 |
Q |
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| T |
47636884 |
tgttgttttgtagaatcattaaaattaatctctcttgagaattgatgatgatttc |
47636830 |
T |
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