View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16706_high_4 (Length: 587)

Name: NF16706_high_4
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16706_high_4
NF16706_high_4
[»] chr7 (3 HSPs)
chr7 (14-195)||(11098940-11099121)
chr7 (224-381)||(11098758-11098915)
chr7 (444-570)||(11098573-11098696)
[»] chr6 (4 HSPs)
chr6 (14-195)||(17998208-17998389)
chr6 (224-381)||(17998414-17998571)
chr6 (444-570)||(17998633-17998756)
chr6 (529-570)||(6530755-6530796)
[»] chr8 (3 HSPs)
chr8 (228-381)||(36283417-36283563)
chr8 (444-511)||(36283625-36283692)
chr8 (529-570)||(36283707-36283749)
[»] chr1 (1 HSPs)
chr1 (228-370)||(19913083-19913217)
[»] chr5 (1 HSPs)
chr5 (228-370)||(40571576-40571711)
[»] chr3 (1 HSPs)
chr3 (82-187)||(6560484-6560591)
[»] chr4 (1 HSPs)
chr4 (457-511)||(723325-723379)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 4e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 11099121 - 11098940
Alignment:
Q  14 catagggcaagtatgttgtaaacactccagtagaatattacgtttcttcacttcaaaaaacaaatgaacatcaattctgtgtttaaatatctttaaatat 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  11099121 catagggcaagtatgttgtaaacactccaggagaatattacgtttcttcacttcaagaaacaaatgagcatcaattttgtgtttaaatatctttaaatat 11099022  T
Q  114 agaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgattcaactctttttcattcttgaaggagt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11099021 agaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgactcaactctttttcattcttgaaggagt 11098940  T

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Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 224 - 381
Target Start/End: Complemental strand, 11098915 - 11098758
Alignment:
Q  224 ttagtattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatat 323  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11098915 ttagtattgaattccattgaccatgaatgacttacagattttgttattactattttctatattcttccaattagctacagttatgtcagttcttaaatat 11098816  T
Q  324 acaatttcttaattctttcctagcattacttacccaacaagtggaaatatattgtctc 381  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11098815 acaatttcttaattctttcctagcattatttacccaacaagtggaaatatattgtctc 11098758  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 444 - 570
Target Start/End: Complemental strand, 11098696 - 11098573
Alignment:
Q  444 ccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactnnnnnnnnnnnnnnnnnttgagctcctcttgt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||    
T  11098696 ccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgact---atgatggtgatgatttgagctcctcttgt 11098600  T
Q  544 tggttgaatttttcatagctctcaagt 570  Q
    |||||||||||||||||||||||||||    
T  11098599 tggttgaatttttcatagctctcaagt 11098573  T

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Target: chr6 (Bit Score: 162; Significance: 4e-86; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 17998208 - 17998389
Alignment:
Q  14 catagggcaagtatgttgtaaacactccagtagaatattacgtttcttcacttcaaaaaacaaatgaacatcaattctgtgtttaaatatctttaaatat 113  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  17998208 catagggcaagtatgttgtaaacactccaggagaatattacgtttcttcacttcaagaaacaaatgagcatcaattttgtgtttaaatatctttaaatat 17998307  T
Q  114 agaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgattcaactctttttcattcttgaaggagt 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17998308 agaacaaacaattagtttcatatgctagttttctgtactatgagaaacttctgactcaactctttttcattcttgaaggagt 17998389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 224 - 381
Target Start/End: Original strand, 17998414 - 17998571
Alignment:
Q  224 ttagtattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatat 323  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17998414 ttagtattgaattccattgaccatgaatgacttacagattttgttattactattttctatattcttccaattagctacagttatgtcagttcttaaatat 17998513  T
Q  324 acaatttcttaattctttcctagcattacttacccaacaagtggaaatatattgtctc 381  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17998514 acaatttcttaattctttcctagcattatttacccaacaagtggaaatatattgtctc 17998571  T

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Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 444 - 570
Target Start/End: Original strand, 17998633 - 17998756
Alignment:
Q  444 ccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgactnnnnnnnnnnnnnnnnnttgagctcctcttgt 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||    
T  17998633 ccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgact---atgatggtgatgatttgagctcctcttgt 17998729  T
Q  544 tggttgaatttttcatagctctcaagt 570  Q
    |||||||||||||||||||||||||||    
T  17998730 tggttgaatttttcatagctctcaagt 17998756  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 6530755 - 6530796
Alignment:
Q  529 ttgagctcctcttgttggttgaatttttcatagctctcaagt 570  Q
    ||||||||||||||||||||| || || ||||||||||||||    
T  6530755 ttgagctcctcttgttggttggatcttccatagctctcaagt 6530796  T

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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 228 - 381
Target Start/End: Original strand, 36283417 - 36283563
Alignment:
Q  228 tattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatatacaa 327  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||    
T  36283417 tattgaattccagtggccatgaatgacttacagattt-------actattttctatactcttccaattaactacagttatgtcagttcttaaatatacaa 36283509  T
Q  328 tttcttaattctttcctagcattacttacccaacaagtggaaatatattgtctc 381  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36283510 tttcttaattctttcctagcattacttatccaacaagtggaaatatattgtctc 36283563  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 444 - 511
Target Start/End: Original strand, 36283625 - 36283692
Alignment:
Q  444 ccattcttccatgttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgact 511  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36283625 ccattcttccaagttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgact 36283692  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 529 - 570
Target Start/End: Original strand, 36283707 - 36283749
Alignment:
Q  529 ttgagctcctcttgttggttgaa-tttttcatagctctcaagt 570  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36283707 ttgagctcctcttgttggttgaattttttcatagctctcaagt 36283749  T

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Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 19913083 - 19913217
Alignment:
Q  228 tattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatatacaa 327  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  19913083 tattgaattccagtggccatgaatgacttacagattt-------actattttctatattcttccaattaactacg-ttatgtcagttcttaaatatacaa 19913174  T
Q  328 tttcttaattctttcctagcattacttacccaacaagtggaaa 370  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  19913175 tttcttaattcttgcctagcattacttacccaacaagtggaaa 19913217  T

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Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 40571576 - 40571711
Alignment:
Q  228 tattgaattccagtggccatgaatgacttacagattttgttattactattttctatattcttccaattagctacggttatgtcagttcttaaatatacaa 327  Q
    |||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  40571576 tattgaattccagtggccatgaatgacttacagattt-------attattttctatattcttccaattaactacagttatgtcggttcttaaatatacaa 40571668  T
Q  328 tttcttaattctttcctagcattacttacccaacaagtggaaa 370  Q
    ||||||||||||| ||||||||||||||||||||||| |||||    
T  40571669 tttcttaattcttgcctagcattacttacccaacaagcggaaa 40571711  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 6560484 - 6560591
Alignment:
Q  82 catcaattctgtgtttaaatatctttaa--atatagaacaaacaattagtttcata-tgctagttttctgtactatgagaaacttctgattcaactcttt 178  Q
    |||||||||| ||||||| |||||||    |||||| |||||||||||||||| || |||||||||  |||||||||||||||||   |||||| |||||    
T  6560484 catcaattctctgtttaattatctttttgtatatagtacaaacaattagtttcgtaatgctagtttgttgtactatgagaaactt-acattcaagtcttt 6560582  T
Q  179 ttcattctt 187  Q
    |||||||||    
T  6560583 ttcattctt 6560591  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 511
Target Start/End: Complemental strand, 723379 - 723325
Alignment:
Q  457 ttggcatcgagggaatccataatgaatttatctccgcctgttcataagaatgact 511  Q
    ||||||||||| | | |||||||||||| ||||||||||| |||| |||||||||    
T  723379 ttggcatcgagaggaaccataatgaattcatctccgcctgctcatgagaatgact 723325  T

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