View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16706_high_8 (Length: 493)
Name: NF16706_high_8
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Complemental strand, 48594058 - 48593585
Alignment:
| Q |
9 |
agtgagatgaaaggaagatcaaatagcaaaactatgagaaaattaaaacaatcaccctgcattgcaggcgatatcctgttactgcttctctctacataat |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48594058 |
agtgaaatgaaaggaagatcaaatagcaaaactatgagaaaattaaaacaattaccctgcattgcaggcgatatcctgttacagcttctctctacataat |
48593959 |
T |
|
| Q |
109 |
acaacatttcctacccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593958 |
acaacatttcctacccttacctaattcctataactccttgccactatatattcaatatttagtcataaaattgtaggattagtttagttatctcaatatc |
48593859 |
T |
|
| Q |
209 |
taatatcacataatataactccgtacctccgttgacatttatagagacccttatacttgg------tattctttcaagaaagctataatttcttgttctt |
302 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
48593858 |
tagtatcacataatataactccgtacctccgttgacatttatagagacccttatacttggtttgcatattctttcaagaaacctataatttcttgttctt |
48593759 |
T |
|
| Q |
303 |
ataccttgttattacattaataaagtaaggaatttccttatatttactgtttatgcctttagtttatcttgttttgtttatgatggaatctagtgagtag |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593758 |
ataccttgttattacattaataaagtaaggaatttccttatatttacggtttatgcctttagtttatcttgttttgtttatgatggaatctagtgagtag |
48593659 |
T |
|
| Q |
403 |
gcaccctttgtcttggaattgtggaaagaagtcacaacgaatattccataaatctctgttctctttgtttctat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48593658 |
gcaccctttgtcttggaattgtggaaagaagtcacaacgaatattccataaatctctgttctctttgtttctat |
48593585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University