View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_low_11 (Length: 352)
Name: NF16706_low_11
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_low_11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 79 - 352
Target Start/End: Original strand, 453574 - 453847
Alignment:
| Q |
79 |
tagtcgccacctccctttacgttatcttttccaccattaagtggctccaaaatcaatttccttccacttataactgcataatattgcacgattgacttat |
178 |
Q |
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| T |
453574 |
tagtcgccacctccctttaccttatcttttccaccattaagtggctccaaaatcaatttccttccacttataactgcataatattgcacaattgacttaa |
453673 |
T |
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| Q |
179 |
ataactatcattcacgacatctatcaataccattaaaactaaacacaaaaatagagaaaatataaataaagttaccatattctttgttgtgatattccat |
278 |
Q |
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| T |
453674 |
ataactatcattcatgacatctatcaataccgttagaactaaacacagaaatagagaaaataaaaataaagttaccatattctttcttgtgatattccat |
453773 |
T |
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| Q |
279 |
aagctcttcatcctttccgctttgtgattgtttttcataagcactcgctacagagagaaccacaccagacagaa |
352 |
Q |
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| T |
453774 |
aagctcttcatcctttccgcttggtgatggtttttcataagcactccctacagagagaaccacaccagacagaa |
453847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 441263 - 441350
Alignment:
| Q |
106 |
tttccaccattaagtggctccaaaatcaatttccttccacttataactgcataatattgcacgattgacttatataactatcattcac |
193 |
Q |
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| T |
441263 |
tttccaccatgaagtggctctaaggtcattttccttccacttaaaactgcataatatttcacaattaacttaaataaccatcattcac |
441350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 441393 - 441502
Alignment:
| Q |
246 |
aaagttaccatattctttgttgtgatattccataagctcttcatcctttccgctttgtgattgtttttcataagcactcgctacaga---gagaaccaca |
342 |
Q |
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| T |
441393 |
aaagttaccatattcttgcttgtcacactccataagctcttcatcctttctgcttggtggtggatcttcataagccgtcactgcagatatgagaaccaca |
441492 |
T |
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| Q |
343 |
ccagacagaa |
352 |
Q |
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| T |
441493 |
ccagacagaa |
441502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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