View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_low_16 (Length: 249)
Name: NF16706_low_16
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 33090734 - 33090504
Alignment:
| Q |
1 |
agtgttgggaaaagcatctatcatgaaatatgataatagaaaatttggaaaacataaaactttagcttaatgaagaaaggtaggtgatatatcaaatatg |
100 |
Q |
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| T |
33090734 |
agtgttgggaaaagcatctatcatgaaatatgataatagaaaatttggaaaacataaaactctagcttaatgaagaaaggtaggtgatatatcaaatatg |
33090635 |
T |
|
| Q |
101 |
ttggcacatgagacagacactttgttctaacataacatcctcaaaattaatcttgattaagaagtaatacacagatagaaaatttaaacaagaatgaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33090634 |
ttggcacatgagacagacactttgttctaacataacatcctcaaaattaatcttgattaagaagtaatacaaagatagaaaatttaaacaagaatgaata |
33090535 |
T |
|
| Q |
201 |
attaggatattatcagttaatgagaccacat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33090534 |
attaggatattatcagttaatgagaccacat |
33090504 |
T |
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