View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_low_6 (Length: 553)
Name: NF16706_low_6
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 34525720 - 34526013
Alignment:
| Q |
22 |
actcacttagtgtgccacaataaatttatatatgttgaacccaaacatcataaaatattgtcaaatcacgttcaaagacattaaacacacgaatagagac |
121 |
Q |
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| T |
34525720 |
actcacttaatgtgccacaataaatttatatatgttgaacccaaacatcataaaatatcgtcaaatcacgttcaaagacattaaacacacgaatagagac |
34525819 |
T |
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| Q |
122 |
ggttaagaatatcgtcaacgtgaatccaaacactacattaatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaata |
221 |
Q |
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| T |
34525820 |
ggtcaagaatatcgtcaacgtgaatccaaacactacattgatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaata |
34525919 |
T |
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| Q |
222 |
tagagggtaatataaagttgcacatttccataactgcctttgtgacagaatcttgaaataatttttgtaacataaaacattattctaggtagtac |
316 |
Q |
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| T |
34525920 |
tcgagggtaatatatagttgcacatttccataactg-ctttgtgacagaatcttgaaataatttttgtaacataaaacattattccaggtagtac |
34526013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 344 - 537
Target Start/End: Original strand, 34526016 - 34526209
Alignment:
| Q |
344 |
ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaacttcaatttcaacctatgacaaaatcctactactacatcttactttaaca |
443 |
Q |
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| T |
34526016 |
ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaatttcaatttcaacctatgacaaaatcctactgctacatcttactttaaca |
34526115 |
T |
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| Q |
444 |
aaccagaccatgaaaccaaacaactaagactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacattttttct |
537 |
Q |
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| T |
34526116 |
aaccagaccatgaaaccaaacaactaacactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacattttttct |
34526209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 525
Target Start/End: Original strand, 31677101 - 31677148
Alignment:
| Q |
478 |
ttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgat |
525 |
Q |
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| T |
31677101 |
ttgagcttatagcttataagctaatttgacaaaaaagacctgtttgat |
31677148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 44222521 - 44222484
Alignment:
| Q |
62 |
ccaaacatcataaaatattgtcaaatcacgttcaaaga |
99 |
Q |
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| T |
44222521 |
ccaaacatcataaaatattttcaaatcatgttcaaaga |
44222484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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