View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16706_low_7 (Length: 521)
Name: NF16706_low_7
Description: NF16706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16706_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Original strand, 6622148 - 6622647
Alignment:
| Q |
7 |
ggacatcatcaagctttgttcatataataataacaataagaaaactggaggccatcgtgaaaa-ggaataatgattggtataaacaaatcgagagtaaga |
105 |
Q |
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| T |
6622148 |
ggacatcattaagctttgttcatataataataacaataagaaaactggaggccatcgtgaaaaaggaataatgattggtataaacaaatcgagagtaaga |
6622247 |
T |
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| Q |
106 |
aaacttttgtattaaagaaccaactgttaaaaaaccttgctactccgtcgacccaaaataggattgtctcctcttgtaggatatagttgtggatttcatc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6622248 |
aaacttttgtattaaagaaccaactgttaaaaaaccttgctactccgtcgacccaaaataggattgtctcctcttgtaggatatagttgtggatttcatc |
6622347 |
T |
|
| Q |
206 |
caaaacaaaagccaatgacattggtgcataaaatatgtatagtatatacaaaaactgcaaaagcaactgtatcagttagccgaaactctatggtttcacc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6622348 |
caaaacaaaagccaatgacattggtgcataaaatatgtatagtatatacaaaaactgcaaaagcaactgtatcagttagccgaaactctatggtttcacc |
6622447 |
T |
|
| Q |
306 |
tctccaagcttaaacttttactgatgctgggtgatattctctgttgcatatcatttgcctgtattttcaataagctagagaccacctcttcaatgtttgg |
405 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6622448 |
tctccaagcttaaactcttattgatgctgggtgatattctctgttgcatatcatttgcctgtattttcaataagctagagaccacctcttcaatgtttgg |
6622547 |
T |
|
| Q |
406 |
tctgctatctggttcttgaatcaagcaggctagactcagtttaactagctgcagtgcacaggctttcctacaactttcgatgaggcaaggatcaatgaac |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6622548 |
tctgctatctggttcttgaatcaagcaggctagactcagtttaactagctgcagtgcacaggctttcctacaactttcgatgaggcaaggatcaatgaac |
6622647 |
T |
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