View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16707_high_12 (Length: 218)
Name: NF16707_high_12
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_high_12 |
 | |
|
| [»] scaffold0219 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 12804654 - 12804806
Alignment:
| Q |
50 |
taagattttatttgattgttg-ttacattttcttactttaatatgtcataaatggtgtaattnnnnnnntgtttgccataaatgatgatttgactttgat |
148 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
12804654 |
taagattttatttgattgttggttacattttcttactttaatatgtcataaatggtgtaattaaaaaaatgtttgccataaatggtgatttgactttgat |
12804753 |
T |
|
| Q |
149 |
tgtttcaaccttgcattgccacatgtaacatttcctttgtattagattttgat |
201 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12804754 |
tgtttcaaccttgtattgccacatgtaacatttcctttgtattggattttgat |
12804806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 12804345 - 12804382
Alignment:
| Q |
14 |
attatactcaccttgtaataataaaattcaatgaatta |
51 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
12804345 |
attacactcaccttgtaataataaaattcaataaatta |
12804382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 34561963 - 34562012
Alignment:
| Q |
54 |
attttatttgattgtt-gttacattttcttactttaatatgtcataaatg |
102 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||| ||||||||| |
|
|
| T |
34561963 |
attttatttgattgttagttacactttgttactttaatatatcataaatg |
34562012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 34453246 - 34453410
Alignment:
| Q |
47 |
aattaagattttatttgattgttgttacattttcttactttaatatgtcataaatggtgtaatt----------nnnnnnntgtttgccataaatgatga |
136 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34453246 |
aattaagattttatttgattgtggttatgttttcgtactttaatatgtcataaatggtgtaattaacaaaaaaaaaaaaaaagtttgccataaatgatga |
34453345 |
T |
|
| Q |
137 |
tttgactttgattgtttcaaccttgcattgccacatgtaacatttcctttgtattagattttgat |
201 |
Q |
| |
|
||| ||| |||||| ||||||||||||||| ||| |||||| ||| ||||||||| |||||||| |
|
|
| T |
34453346 |
tttaactatgattgcttcaaccttgcattgtcacgtgtaaccttttctttgtattgaattttgat |
34453410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 34453197 - 34453236
Alignment:
| Q |
19 |
actcaccttgtaataataaaattcaatgaattaagatttt |
58 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
34453197 |
actcaccttgtaataataaaatttaatgaattaagttttt |
34453236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 45891720 - 45891668
Alignment:
| Q |
55 |
ttttatttgattgttg-ttacattttcttactttaatatgtcataaatggtgt |
106 |
Q |
| |
|
|||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| |
|
|
| T |
45891720 |
ttttatttgattgttggttatactttgttactttagtatgtcataaatggtgt |
45891668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 26558532 - 26558612
Alignment:
| Q |
27 |
tgtaataataaaattcaatgaattaagattttatttgattgtt-gtt---acattttcttactttaatatgtcataaatgg |
103 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||||||||||| ||| ||| ||| |||||||| |||||||||||||| |
|
|
| T |
26558532 |
tgtaatgataaaatttaatgaatcaagattttatttgattgttagttacaacactttgttactttagtatgtcataaatgg |
26558612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 1856 - 1804
Alignment:
| Q |
55 |
ttttatttgattgttg-ttacattttcttactttaatatgtcataaatggtgt |
106 |
Q |
| |
|
|||||||||||||||| ||| | ||| |||||||| ||||||||||||||||| |
|
|
| T |
1856 |
ttttatttgattgttggttatactttgttactttagtatgtcataaatggtgt |
1804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University