View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16707_high_5 (Length: 312)

Name: NF16707_high_5
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16707_high_5
NF16707_high_5
[»] chr6 (1 HSPs)
chr6 (1-291)||(26495495-26495785)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 26495785 - 26495495
Alignment:
Q  1 tattttgaagaagggattgttgagagaattcaaaagggtgattgaatcaacaagaaaaaatggctaccgaggcgtttatgttaaaagaaagcgcctattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495785 tattttgaagaagggattgttgagagaattcaaaagggtgattgaatcaacaagaaaaaatggctaccgaggcgtttatgttaaaagaaagcgcctattt 26495686  T
Q  101 ttcattaagagcattgaagagtctttttgtgttattatcagctattgttatggtacttttgttaccatttagagggagaagaagggtatctcctgttgaa 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495685 ttcattaagagcattgaagagtctttttgtgttaatatcagctattgttatggtacttttgttaccatttagagggagaagaagggtatctcctgttgaa 26495586  T
Q  201 aaagaagagaagatacaaaatcatgagtgttgtcatcatcatcggaaaggcacggtggtgcgcgttccggcaaagattgtgccatggaaga 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495585 aaagaagagaagatacaaaatcatgagtgttgtcatcatcatcggaaaggcacggtggtgcgcgttccggcaaagattgtgccatggaaga 26495495  T

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