View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16707_high_8 (Length: 295)

Name: NF16707_high_8
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16707_high_8
NF16707_high_8
[»] chr2 (11 HSPs)
chr2 (14-254)||(28412427-28412662)
chr2 (203-254)||(26769592-26769643)
chr2 (205-254)||(34993922-34993971)
chr2 (205-254)||(42511322-42511371)
chr2 (202-253)||(34784908-34784959)
chr2 (205-254)||(15909570-15909619)
chr2 (205-242)||(33153498-33153535)
chr2 (205-254)||(37419824-37419873)
chr2 (205-254)||(41433221-41433270)
chr2 (210-254)||(12224293-12224337)
chr2 (205-241)||(35455284-35455320)
[»] chr7 (8 HSPs)
chr7 (205-254)||(21864878-21864927)
chr7 (205-254)||(40131939-40131988)
chr7 (206-253)||(20545185-20545232)
chr7 (204-254)||(38804488-38804538)
chr7 (205-254)||(5409771-5409820)
chr7 (205-254)||(15680879-15680928)
chr7 (205-254)||(24105748-24105797)
chr7 (205-242)||(38134335-38134372)
[»] chr3 (8 HSPs)
chr3 (205-254)||(4466540-4466589)
chr3 (205-254)||(10455866-10455915)
chr3 (205-254)||(21211364-21211413)
chr3 (205-254)||(25074865-25074914)
chr3 (205-254)||(27277780-27277828)
chr3 (205-254)||(34185052-34185101)
chr3 (205-254)||(40052382-40052431)
chr3 (205-254)||(41961579-41961628)
[»] chr4 (8 HSPs)
chr4 (205-253)||(16184902-16184950)
chr4 (202-253)||(29205539-29205590)
chr4 (206-254)||(18575984-18576032)
chr4 (203-253)||(715543-715593)
chr4 (203-253)||(752869-752919)
chr4 (208-254)||(28084594-28084640)
chr4 (205-254)||(19482749-19482798)
chr4 (205-254)||(23292926-23292975)
[»] scaffold0450 (1 HSPs)
scaffold0450 (203-254)||(8562-8613)
[»] chr6 (9 HSPs)
chr6 (205-254)||(9027237-9027286)
chr6 (207-266)||(28862175-28862234)
chr6 (205-254)||(8365448-8365497)
chr6 (206-239)||(26553831-26553864)
chr6 (205-254)||(28715365-28715414)
chr6 (204-252)||(3209471-3209519)
chr6 (205-253)||(10339054-10339102)
chr6 (206-254)||(17841530-17841578)
chr6 (210-254)||(25096504-25096548)
[»] chr5 (6 HSPs)
chr5 (209-254)||(30183630-30183675)
chr5 (203-241)||(9929684-9929722)
chr5 (208-254)||(39268541-39268587)
chr5 (205-254)||(21576685-21576734)
chr5 (205-254)||(27932305-27932354)
chr5 (205-253)||(38464313-38464361)
[»] chr1 (8 HSPs)
chr1 (207-254)||(1486646-1486693)
chr1 (203-254)||(34712321-34712372)
chr1 (203-254)||(52903316-52903367)
chr1 (205-254)||(9828125-9828174)
chr1 (205-254)||(18190048-18190097)
chr1 (205-254)||(37598901-37598950)
chr1 (209-254)||(48040418-48040463)
chr1 (205-253)||(22794018-22794066)
[»] scaffold0793 (1 HSPs)
scaffold0793 (203-253)||(4819-4869)
[»] scaffold0019 (1 HSPs)
scaffold0019 (205-254)||(71806-71855)
[»] chr8 (6 HSPs)
chr8 (205-254)||(8343037-8343086)
chr8 (205-254)||(8343397-8343446)
chr8 (205-254)||(22652057-22652106)
chr8 (205-254)||(36450694-36450743)
chr8 (205-253)||(18407790-18407838)
chr8 (203-239)||(28819287-28819323)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 5e-90; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 28412662 - 28412427
Alignment:
Q  14 agggttaagacaggaaaaaagaaagtattgctcgagagggagggacttttcggtattgtttaaggattattggaactatcagagttctggttttatgaat 113  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28412662 agggttaagacaggaaaaaagaaattattgttcgagagggagggacttttcggtattgtttaaggattattggaactatcagagttctggttttatgaat 28412563  T
Q  114 attcctaacaaggttaagatatttttatcatgaaaaatgataaaacctacgaaagagtnnnnnnnnnnnnnnncgaaggcttattttgtatctatgaagc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||    
T  28412562 attcctaacaaggttaagatatttttatcatgaaaaatgataaaacctacgaaagagtaaaaaaaaaaa-----gaaggcttattttgtatctatgaagc 28412468  T
Q  214 acatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||  || ||||||||||||||||||||||||||||||||||    
T  28412467 actgacgctcctcgaattagccgtgtcccagtgtcggacac 28412427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 26769643 - 26769592
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||||  |||||||||| ||||| ||||||||||||||||||||    
T  26769643 atctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 26769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 34993922 - 34993971
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||| ||||||| ||||||||||||||||||||    
T  34993922 ctatgaagcacgaacactccttgaattaggcgtgtcccagtgtcggacac 34993971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 42511322 - 42511371
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| |||||||||||||| |||||||||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtccctgtgtcggacac 42511371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 253
Target Start/End: Original strand, 34784908 - 34784959
Alignment:
Q  202 tatctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    ||||||||||||||| ||||||||||||| || |||||||| ||||| ||||    
T  34784908 tatctatgaagcacagacactcctcgaataaggcgtgtccccgtgtcagaca 34784959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 15909570 - 15909619
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||| ||||||||| |||||||| |||||||||||    
T  15909570 ctatgaagcacgaacactcttcgaattaggcgtgtccctgtgtcggacac 15909619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 33153535 - 33153498
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtccc 242  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  33153535 ctatgaagcacatacactccttgaattagacgtgtccc 33153498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 37419873 - 37419824
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 37419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 41433270 - 41433221
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||||||||||||||||||||||  |||||  | |||||||||||    
T  41433270 ctatgaagcacatacactcctcgaattaaacgtgtttcggtgtcggacac 41433221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 12224337 - 12224293
Alignment:
Q  210 aagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||| |||||||| | ||||| ||||||||||||||||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacac 12224293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 35455320 - 35455284
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcc 241  Q
    |||||||| |||||||||| |||||||||||||||||    
T  35455320 ctatgaagaacatacactcttcgaattagccgtgtcc 35455284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 21864927 - 21864878
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||    
T  21864927 ctatgaagcacagacactcctcgaattagacgtgtcccggtgtcggacac 21864878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 40131939 - 40131988
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||||||| ||||| |||||||| |||||||||||    
T  40131939 ctatgaagcacagacactcctcggattagacgtgtccctgtgtcggacac 40131988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 20545185 - 20545232
Alignment:
Q  206 tatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    ||||||||||| |||||||||||||||  |||||||| ||||||||||    
T  20545185 tatgaagcacagacactcctcgaattaaacgtgtccccgtgtcggaca 20545232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 38804488 - 38804538
Alignment:
Q  204 tctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||||||||||||||| ||||| | |||||| | |||||||||    
T  38804488 tctatgaagcacatacactcctcggattaggcatgtcccggcgtcggacac 38804538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 5409771 - 5409820
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 5409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 15680928 - 15680879
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||||||||| |||||| | |||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacac 15680879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 24105797 - 24105748
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| ||||||||||  |||| |||||||| |||||||||||    
T  24105797 ctatgaagcacaaacactcctcgggttaggcgtgtcccggtgtcggacac 24105748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 242
Target Start/End: Original strand, 38134335 - 38134372
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtccc 242  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  38134335 ctatgaagcacatacactcctcggattaggcgtgtccc 38134372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 4466540 - 4466589
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  4466540 ctatgaagcacggacactcctcgaataagccgtgtcccagtgtcggacac 4466589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 10455915 - 10455866
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||||||||||||||| | ||||  ||||||||||||||||||||    
T  10455915 ctatgaagcacatacactccttggattaaacgtgtcccagtgtcggacac 10455866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 21211413 - 21211364
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||||||| |||||  |||||||||||||||||||    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacac 21211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 25074914 - 25074865
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| |||||  |||||||||||||||||||    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacac 25074865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 27277780 - 27277828
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||||||||||||||||| ||||| | |||||| |||||||||||    
T  27277780 ctatgaagcacatacactcctcggattagacatgtccc-gtgtcggacac 27277828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 34185052 - 34185101
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 40052431 - 40052382
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacac 40052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 41961579 - 41961628
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  ||||| |||| ||||| ||||||||||||||||||||    
T  41961579 ctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacac 41961628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 16184950 - 16184902
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    |||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  16184950 ctatgaagcacaaacactcctcggattaggcgtgtcccagtgtcggaca 16184902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 29205590 - 29205539
Alignment:
Q  202 tatctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    ||||||||||||||  |||||||||| ||||| |||||||||||||||||||    
T  29205590 tatctatgaagcacgaacactcctcggattaggcgtgtcccagtgtcggaca 29205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 18575984 - 18576032
Alignment:
Q  206 tatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||||||||| ||||||||| |||||||| || ||||||||    
T  18575984 tatgaagcacatacactcatcgaattaggcgtgtcccggtttcggacac 18576032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 715543 - 715593
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    |||||||||||||  |||||||||| ||||| |||||||| ||||||||||    
T  715543 atctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 715593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 752869 - 752919
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    |||||||||||||  |||||||||| ||||| |||||||| ||||||||||    
T  752869 atctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 752919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 28084640 - 28084594
Alignment:
Q  208 tgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||  |||||||||| ||||| ||||||||||||||||||||    
T  28084640 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 28084594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 19482798 - 19482749
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| |||||  |||||||||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacac 19482749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 23292926 - 23292975
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 23292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 8562 - 8613
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  8562 atctatgaagcacggacactcctcgaattaggcgtgtaccagtgtcggacac 8613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 9027286 - 9027237
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||||| | |||||||||||||| |||||||||||    
T  9027286 ctatgaagcacaaacactccttggattagccgtgtcccggtgtcggacac 9027237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 28862234 - 28862175
Alignment:
Q  207 atgaagcacatacactcctcgaattagccgtgtcccagtgtcggacaccaacacggcacc 266  Q
    |||||||||  |||| |||||||||||  ||||||||||||| |||||||||||| ||||    
T  28862234 atgaagcacggacacgcctcgaattaggtgtgtcccagtgtcagacaccaacacgacacc 28862175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 8365448 - 8365497
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  | |||||||| ||||| ||||||||||||||||||||    
T  8365448 ctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacac 8365497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 26553864 - 26553831
Alignment:
Q  206 tatgaagcacatacactcctcgaattagccgtgt 239  Q
    |||||||||||||||||||||||||||| |||||    
T  26553864 tatgaagcacatacactcctcgaattaggcgtgt 26553831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 28715414 - 28715365
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||||| |||||| |||||||||| |||||||| |||||| ||||    
T  28715414 ctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacac 28715365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 3209519 - 3209471
Alignment:
Q  204 tctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggac 252  Q
    ||||||||||||| |||||||||| ||||| |||||||  |||||||||    
T  3209519 tctatgaagcacaaacactcctcggattaggcgtgtccgggtgtcggac 3209471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 10339054 - 10339102
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    |||||||||||  |||||||||  ||||| |||||||||||||||||||    
T  10339054 ctatgaagcacggacactcctccgattaggcgtgtcccagtgtcggaca 10339102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 17841530 - 17841578
Alignment:
Q  206 tatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||||  |||||||||| ||||| |||||| |||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacac 17841578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 25096548 - 25096504
Alignment:
Q  210 aagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||| ||| |||||||||||| ||||||||||||| ||||||    
T  25096548 aagcacaaacattcctcgaattagacgtgtcccagtgtgggacac 25096504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 30183675 - 30183630
Alignment:
Q  209 gaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||||    
T  30183675 gaagcacagacacttctcgaattaggcgtgtcccagtgtcggacac 30183630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 9929722 - 9929684
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcc 241  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  9929722 atctatgaagcacagacactcctcgaattagtcgtgtcc 9929684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 39268541 - 39268587
Alignment:
Q  208 tgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||  |||||||||| ||||| ||||||||||||||||||||    
T  39268541 tgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 39268587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 21576685 - 21576734
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||||||||| |||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacac 21576734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 27932354 - 27932305
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||||||||||||| |||||||  ||||| |||||    
T  27932354 ctatgaagcacaaacactcctcgaattaggcgtgtcctggtgtccgacac 27932305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    |||||||||||| |||||||||| |||||  ||||||| ||||||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 1486646 - 1486693
Alignment:
Q  207 atgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||| |||||||||| ||||| |||||||| |||||||||||    
T  1486646 atgaagcacagacactcctcggattaggcgtgtcccggtgtcggacac 1486693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 34712321 - 34712372
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||||  |||||||| ||||||| ||||||||||||| ||||||    
T  34712321 atctatgaagcacggacactccttgaattagacgtgtcccagtgtaggacac 34712372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 52903367 - 52903316
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||||  |||||| |||||| ||||||||||| |||||||||||    
T  52903367 atctatgaagcacggacactcttcgaataagccgtgtcccggtgtcggacac 52903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 9828174 - 9828125
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  9828174 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 9828125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 18190048 - 18190097
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    ||||||||| ||||||||||||| |||||  ||||||| |||||||||||    
T  18190048 ctatgaagcgcatacactcctcggattaggtgtgtcccggtgtcggacac 18190097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 37598950 - 37598901
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| ||||||||| ||||||||||    
T  37598950 ctatgaagcacggacactcctcggattaggcgtgtcccattgtcggacac 37598901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 48040418 - 48040463
Alignment:
Q  209 gaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||  ||||||||| |||||| ||||||||||||||||||||    
T  48040418 gaagcacggacactcctccaattaggcgtgtcccagtgtcggacac 48040463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 22794018 - 22794066
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    ||||||||||| |||||||||||||||||  ||||||| | ||||||||    
T  22794018 ctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggaca 22794066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Original strand, 4819 - 4869
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    |||||||||||||  |||||||||| ||||| |||||||| ||||||||||    
T  4819 atctatgaagcacggacactcctcggattaggcgtgtccctgtgtcggaca 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 71855 - 71806
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  71855 ctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacac 71806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 8343086 - 8343037
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||| ||| ||||| |||||||| |||||||||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 8343446 - 8343397
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||| ||| ||||| |||||||| |||||||||||    
T  8343446 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 22652106 - 22652057
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||  |||||||||| ||||| |||||||| |||||||||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 22652057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 36450694 - 36450743
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggacac 254  Q
    |||||||||||| |||||||||| ||||| |||||||  |||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacac 36450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 18407838 - 18407790
Alignment:
Q  205 ctatgaagcacatacactcctcgaattagccgtgtcccagtgtcggaca 253  Q
    |||||||||||  ||||||||| |||||| ||||||| |||||||||||    
T  18407838 ctatgaagcacggacactcctccaattaggcgtgtcctagtgtcggaca 18407790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 28819323 - 28819287
Alignment:
Q  203 atctatgaagcacatacactcctcgaattagccgtgt 239  Q
    |||||||||||||||| |||||||| |||||||||||    
T  28819323 atctatgaagcacatatactcctcggattagccgtgt 28819287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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