View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16707_high_9 (Length: 271)
Name: NF16707_high_9
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 2114968 - 2115196
Alignment:
| Q |
18 |
ttaacaaggtttgttttgtgcaactctttctttaatttaattccatattttctaaactttctgtattcgttaaacaactcgggtcttgttttccttgttt |
117 |
Q |
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| T |
2114968 |
ttaacaaggtttgttttgtgcaactctttctttaatttaattccatattttctaaactttctgtattcgttaaacaactcgggtcttgttttccttgttt |
2115067 |
T |
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| Q |
118 |
ggcttaacaacttaattatgtgttaactctttc--nnnnnnnnngacttaatcacgtgtgtgtatagcataaccacttatcttataagtgcctatgtatt |
215 |
Q |
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| T |
2115068 |
ggcttaacaacttaattatgtgtttactctttcaaaaaaaaaaagacttaatcacgtgtgtgtatagcataaccacttatcttataagtacctatgtatt |
2115167 |
T |
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| Q |
216 |
agcaaattctataacaaatgatcaaataa |
244 |
Q |
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| T |
2115168 |
agcaaattctataacaaatgatcaaataa |
2115196 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 22214830 - 22214758
Alignment:
| Q |
189 |
cacttatcttataagtgcctatgtattagcaaattctataacaaatgatcaaataaattgaaattgtgttcat |
261 |
Q |
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| T |
22214830 |
cacttatcgtataagtgcgtatgtataaattatttctataacaaaggataaaataaagtgaaattgtattcat |
22214758 |
T |
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