View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16707_low_1 (Length: 502)
Name: NF16707_low_1
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_low_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Complemental strand, 25948949 - 25948449
Alignment:
| Q |
1 |
taaaaattatcctcctcaacctcaagcagagaaatataaccaagttatgcttgatacaaaatcgtttgaaccgatggttagcttgaggttgcttcagatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25948949 |
taaaaattatcctcctcaacctcaagcagagaaatataaccaagttatgcttgatacaaaatcgtttgaaccgatggttagcttgaggttgcttcagatc |
25948850 |
T |
|
| Q |
101 |
aataatctgagtttggaaggtaagtttcttccggatgaactgaagtggctacaatggcgaggatgtcctttagaatgtatatctttggacactttgccac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25948849 |
aataatctgagtttggaaggtaagtttcttccggatgaactgaagtggctacaatggcgaggatgtcctttagaatgcatatctttggacactttgccac |
25948750 |
T |
|
| Q |
201 |
gtgaactggccgtccttgatctctcaaatggccagaaaattaaaagcttgtggggattgaaaagtcaaaaggtatatgctttagctatattatgcataat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25948749 |
gtgaactggccgtccttgatctctcaaatggccagaaaattaaaagcttgtggggattgaaaagtcaaaaggtatatgctttagctatattaagcataat |
25948650 |
T |
|
| Q |
301 |
tttaatcatgattgcacaaactttggtgattgcaaccttattcacaattattttctttagtgaatcaggacatttgttaaaccagtttttggaatttcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25948649 |
tttaatcatgattgcacaaactttggtgattgcaaccttattcacaattattttctttagtgaatctggacatttgttaaaccagtttttggaatttcaa |
25948550 |
T |
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| Q |
401 |
agttcctttcaaaataattttctgaaatcacagttgttaaaaatgcttaacaaggcgatcaagattctctccatttctaacaatattgctagaatatatg |
500 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25948549 |
agttccctttaaaataattttctgaaatcacagttgttaaaaatgcttaac-aggcggtcaagattctctccatttctaacaatattgctagaatatatg |
25948451 |
T |
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| Q |
501 |
aa |
502 |
Q |
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|| |
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| T |
25948450 |
aa |
25948449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 15 - 483
Target Start/End: Complemental strand, 25959009 - 25958557
Alignment:
| Q |
15 |
ctcaacctcaagcagagaaatataaccaagttatgcttgatacaaaatcgtttgaaccgatggttagcttgaggttgcttcagatcaataatctgagttt |
114 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| || ||||||| |||||| |||||||||||| ||||||||||||| |
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| T |
25959009 |
ctcaacctcaagcagagaaatatgaccaagttacacttgatacaaagtcctttgagccaatggttaacttgagattgcttcagatcgataatctgagttt |
25958910 |
T |
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| Q |
115 |
ggaaggtaagtttcttccggatgaactgaagtggctacaatggcgaggatgtcctttagaatgtatatctttggacactttgccacgtgaactggccgtc |
214 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| |
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| T |
25958909 |
ggaaggtaagtttcttccagatgaactgaagtggctacaatggcgaggatgtcctttagaatgtatacatttgaacactttgccacgtgaactggctgtc |
25958810 |
T |
|
| Q |
215 |
cttgatctctcaaatggccagaaaattaaaagcttgtggggattgaaaagtcaaaaggtatatgctttagctatattatgcataattttaatcatgattg |
314 |
Q |
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||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| | |
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| T |
25958809 |
cttgatctctccaatggcgagaaaattaaaagtttgtggggattgaaaagtcacaaggtatatgcttcagctatattatgcata---------------g |
25958725 |
T |
|
| Q |
315 |
cacaaactttggtgattgcaaccttattcacaattattttctttagtgaatcaggacatttgttaaaccagtttttggaatttcaaagttcctttcaaaa |
414 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||| |||||||| |
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| T |
25958724 |
ca-aaactttagtgattgcaaccttattcacaattattttctttagtgaatcaggacatatgttaaaccagtttttgaaacatcgaagttcttttcaaaa |
25958626 |
T |
|
| Q |
415 |
taattttctgaaatcacagttgttaaaaatgcttaacaaggcgatcaagattctctccatttctaacaa |
483 |
Q |
| |
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||||||||||||| |||| |||||| |||| |||||||||| | |||||||||||||||||||| |||| |
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| T |
25958625 |
taattttctgaaaacacaattgttacaaatacttaacaaggtggtcaagattctctccatttctcacaa |
25958557 |
T |
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