View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16707_low_12 (Length: 241)
Name: NF16707_low_12
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 28412639 - 28412876
Alignment:
| Q |
1 |
tttcttttttcctgtcttaaccctctgattcccgataaaaggggctaataacttattgtgtcgaagataagtaaagtctaacaacaaattgtttcaatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28412639 |
tttcttttttcctgtcttaaccctctgattcccgataaaaggggctaataacttattgtgtcgaagataagtaaagtctaacaacaaattgtttcaatca |
28412738 |
T |
|
| Q |
101 |
gagatcaaacttgcatgcaccgagtcaaactcattaaccacgcaagtgtaaccgaagctcaataatacaatactcacaatcacacacagaattaatcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28412739 |
gagatcaaacttgcatgcaccgagtcaaactcattaaccactcaagtgtaaccgaagctcaataatacaatactcacaatcacacacagaattaatcaaa |
28412838 |
T |
|
| Q |
201 |
tagttcagaaaaggtaaaatttatagtttcaatttcat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28412839 |
tagttcagaaaaggtaaaatttatagtttcaatttcat |
28412876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 93
Target Start/End: Original strand, 1026465 - 1026494
Alignment:
| Q |
64 |
aagataagtaaagtctaacaacaaattgtt |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1026465 |
aagataagtaaagtctaacaacaaattgtt |
1026494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 38585708 - 38585660
Alignment:
| Q |
63 |
gaagataagtaaagtctaacaacaaattgtttcaatcagagatcaaact |
111 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| ||| | |||||||| |
|
|
| T |
38585708 |
gaaggtaagtaaagtctaacaaaaaattgtttcattcataaatcaaact |
38585660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University