View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16707_low_15 (Length: 207)

Name: NF16707_low_15
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16707_low_15
NF16707_low_15
[»] chr3 (4 HSPs)
chr3 (12-190)||(28388099-28388278)
chr3 (86-157)||(28387533-28387604)
chr3 (27-66)||(28387485-28387525)
chr3 (20-60)||(52090896-52090936)
[»] chr5 (1 HSPs)
chr5 (22-65)||(22621073-22621116)
[»] chr6 (3 HSPs)
chr6 (20-60)||(10026154-10026194)
chr6 (20-60)||(10027127-10027167)
chr6 (22-60)||(13178483-13178521)
[»] chr4 (1 HSPs)
chr4 (20-60)||(21360471-21360511)
[»] chr8 (1 HSPs)
chr8 (76-126)||(1214635-1214685)
[»] chr2 (1 HSPs)
chr2 (80-126)||(20985488-20985534)
[»] chr1 (2 HSPs)
chr1 (12-60)||(19897182-19897230)
chr1 (12-60)||(27067191-27067239)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 9e-69; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 12 - 190
Target Start/End: Complemental strand, 28388278 - 28388099
Alignment:
Q  12 attatactaatagttccttaacttaattttaggtaacgttttggtcctt-atcttannnnnnnncttcccatttcaatcctttatctttttaaatgttaa 110  Q
    |||| ||||||| || |||||||||||||||||||| |||||||||||| ||||||        ||||||||||||||||||||||||||||||||||||    
T  28388278 attacactaataatttcttaacttaattttaggtaatgttttggtcctttatcttattttttttcttcccatttcaatcctttatctttttaaatgttaa 28388179  T
Q  111 caatattatcctttttctacaaaaacccagcaaattcataacaaaaaactcatatcttcatcataataaaacccagaaat 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28388178 caatattatcctttttctacaaaaacccagcaaattcataacaaaaaactcatatcttcatcataataaaacccagaaat 28388099  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 28387533 - 28387604
Alignment:
Q  86 aatcctttatctttttaaatgttaacaatattatcctttttctacaaaaacccagcaaattcataacaaaaa 157  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  28387533 aatcctttatctttttaaatgttaacactattatcccttttctacaaaaacccaacaaattcataacaaaaa 28387604  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 28387485 - 28387525
Alignment:
Q  27 ccttaacttaattttaggtaacgttttggtcc-ttatctta 66  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  28387485 ccttaacttaattttaggtaacgttttggtcctttatctta 28387525  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 52090896 - 52090936
Alignment:
Q  20 aatagttccttaacttaattttaggtaacgttttggtcctt 60  Q
    |||||| |||||||||| |||||||||||||||| ||||||    
T  52090896 aatagtcccttaacttatttttaggtaacgttttagtcctt 52090936  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 22621073 - 22621116
Alignment:
Q  22 tagttccttaacttaattttaggtaacgttttggtccttatctt 65  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  22621073 tagttccttaacttaattttaggtaacagtttggtccttatctt 22621116  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 10026154 - 10026194
Alignment:
Q  20 aatagttccttaacttaattttaggtaacgttttggtcctt 60  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  10026154 aatagtcccttaacttaattttaggtaacgttttagtcctt 10026194  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 10027167 - 10027127
Alignment:
Q  20 aatagttccttaacttaattttaggtaacgttttggtcctt 60  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  10027167 aatagtcccttaacttaattttaggtaacattttggtcctt 10027127  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 13178521 - 13178483
Alignment:
Q  22 tagttccttaacttaattttaggtaacgttttggtcctt 60  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  13178521 tagtcccttaacttaattttaggtaacattttggtcctt 13178483  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 21360471 - 21360511
Alignment:
Q  20 aatagttccttaacttaattttaggtaacgttttggtcctt 60  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  21360471 aatagtcccttaacttaattttaggtaacgttttagtcctt 21360511  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 1214685 - 1214635
Alignment:
Q  76 ttcccatttcaatcctttatctttttaaatgttaacaatattatccttttt 126  Q
    ||||||||| ||| ||||||||||||||  ||||||| |||||||||||||    
T  1214685 ttcccattttaatgctttatctttttaagggttaacactattatccttttt 1214635  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 20985488 - 20985534
Alignment:
Q  80 catttcaatcctttatctttttaaatgttaacaatattatccttttt 126  Q
    ||||| |||||||||| |||||||||||||||||| | |||||||||    
T  20985488 cattttaatcctttatgtttttaaatgttaacaatgtcatccttttt 20985534  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 19897182 - 19897230
Alignment:
Q  12 attatactaatagttccttaacttaattttaggtaacgttttggtcctt 60  Q
    ||||||| | |||| |||||||||||||||||||||| |||| ||||||    
T  19897182 attatacaattagtcccttaacttaattttaggtaacattttcgtcctt 19897230  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 27067239 - 27067191
Alignment:
Q  12 attatactaatagttccttaacttaattttaggtaacgttttggtcctt 60  Q
    ||||||||  |||| ||||||||||||||||||||||  ||||||||||    
T  27067239 attatacttttagtcccttaacttaattttaggtaacagtttggtcctt 27067191  T

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