View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16707_low_3 (Length: 440)
Name: NF16707_low_3
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 28926341 - 28926764
Alignment:
| Q |
1 |
catgtcaattatgctccctatgcatcttaaaactccaccgaccccttttccactaatgctggcatatttcccatgcatatgcacatgttacaacaccaac |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926341 |
catgccaattatgctccctatgcatcttaaaactccaccggccccttttccactaatgctggcatatttcccatgcatatgcacatgttacaacaccaac |
28926440 |
T |
|
| Q |
101 |
cctcttgcccatatatatacataaaa-gcataaaaggcacctcattgcattcctgcttaattttggtgttttccgtcgtggctaactctctctattagaa |
199 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||| |
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| T |
28926441 |
cctcttgcccatatatatacatgaaacgcataaaaggcacctcattgcattcctgtttaattttagtgttttctgtcatggctaactctctctattagaa |
28926540 |
T |
|
| Q |
200 |
tatatatgaagaaatttgtagtattttttatgctttttgatcctggtggttatgctatgttgattatatggactgaatccaatgtgactagaagggatat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
28926541 |
tatatatgaagaaatttgtagtattttttatgctttttgatcctggtggttatgctatgttgaatatatggactgaatccaatgtgactcgaaaggatat |
28926640 |
T |
|
| Q |
300 |
aattttggatggagcaaatagggatggtttaagttatgtggtgcaatcatggagggactcttcaaccaaccaaactatgtgtagttacactaatgttttg |
399 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
28926641 |
aattttggatggagcaaataaggatggtttaagttatgtggtgcaatcacggagggactgttcaaccaaccaaactatgtgtagttacactaatattttg |
28926740 |
T |
|
| Q |
400 |
agnnnnnnnatatctgctttttgt |
423 |
Q |
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| T |
28926741 |
agtttttttatatctgctttttgt |
28926764 |
T |
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Back To:
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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 401
Target Start/End: Complemental strand, 30112956 - 30112872
Alignment:
| Q |
317 |
atagggatggtttaagttatgtggtgcaatcatggagggactcttcaaccaaccaaactatgtgtagttacactaatgttttgag |
401 |
Q |
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||||||||||||| ||| |||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
30112956 |
atagggatggtttgggttctgtggtgcaatcccgaagggactcttcaaccaaccaaagtatgtgtagttacactaatattttgag |
30112872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 4966705 - 4966752
Alignment:
| Q |
1 |
catgtcaattatgctccctatgcatcttaaaactccaccgaccccttt |
48 |
Q |
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|||| |||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
4966705 |
catgccaattatgctccctatgcatctaaaaactcaaccggccccttt |
4966752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9888754 - 9888707
Alignment:
| Q |
1 |
catgtcaattatgctccctatgcatcttaaaactccaccgaccccttt |
48 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
9888754 |
catgccaattatgctccctatgcatctaaaaactcaaccggccccttt |
9888707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37605225 - 37605187
Alignment:
| Q |
1 |
catgtcaattatgctccctatgcatcttaaaactccacc |
39 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||| |
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| T |
37605225 |
catgccaattatgctccctatgcatattaaaactccacc |
37605187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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