View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16707_low_4 (Length: 413)
Name: NF16707_low_4
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 358
Target Start/End: Original strand, 53594498 - 53594844
Alignment:
| Q |
12 |
atctatgccatcatacttcttctttctctctgataaccactgtgcctgtttttgcattacttgtaaattgtcatcagaggttatatatcttggttgtgtg |
111 |
Q |
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| T |
53594498 |
atctatgccatcatacttcttctttctctctgataaccactatgcctgtttttgcattacttgtaaattgtcatcagaggttatatatcttggttgtgtg |
53594597 |
T |
|
| Q |
112 |
atagaagaaccaatgtgaagcttttatgtcttggagatgattttaaaatcttgttatttgtgtatactacgtccatttataaagagatatgcaaggaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53594598 |
atagaagaaccaatgtgaagcttttatgtcttggagatgattttaaaatcttgttatttgtgcatactacgtccatttataaagagatatgcaaggaaaa |
53594697 |
T |
|
| Q |
212 |
tgaatgatggaatattgcatagggtttagtataaaaagtcatctaatttgttttatgtttttcatcttttgacgttaatttattgcagtttcaaagtgca |
311 |
Q |
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| T |
53594698 |
tgaatgatggaatattgcatagggtttagtataaaaagtcatctaatttattttatatttttcatcttttgacgttaatttattgcagtttcaaagtgca |
53594797 |
T |
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| Q |
312 |
cataaaatattttataaaatcatggtgtaatattttataaaatcttt |
358 |
Q |
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| T |
53594798 |
cataaaatattttataaaatcatggtgtaatattttataaaatcttt |
53594844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 37982019 - 37982367
Alignment:
| Q |
1 |
gtcttgcttttatctatgccatcatacttcttctttctctctgataaccactgtgcctgtttttgcattacttgtaaattgtcatcagaggttatatatc |
100 |
Q |
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| T |
37982019 |
gtcttgcttttatctatgccatcatacttcttctttctctctgataaccactgtgcctgtttttgcattacttgtaaattgtcatcagaggttatatatc |
37982118 |
T |
|
| Q |
101 |
ttggttgtgtgatagaagaaccaatgtgaagcttttatgtcttggagatgattttaaaatcttgttatttgtgtatactacgtccatttataaagagata |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||| | ||||||||||||||||| |
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| T |
37982119 |
ttggttgtgtggtagaagaaccaatgtgaagcttttatgtcttg--------------------ttatatgtgtatactagggccatttataaagagata |
37982198 |
T |
|
| Q |
201 |
tgcaaggaaaatgaatgatggaatattgcatagggtttagtataaaaagtcatctaatttgttttatgtttttcatcttttgacgttaatttattgcagt |
300 |
Q |
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| T |
37982199 |
tgcaaggaaaatgaatgatggaatattgcatagggtttagtataaaaagtcatctaatttgttttatatttttcatcttttgacgttaatttattgcagt |
37982298 |
T |
|
| Q |
301 |
ttcaaagtgcacataaaatattttataaaatcatggtgtaatattttataaaatcttttaacgtttatt |
369 |
Q |
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| T |
37982299 |
ttcaaagtgcacagaaaatattttataaaatcatggtgtaatattttataaaatcttttgacgtttatt |
37982367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 37982362 - 37982395
Alignment:
| Q |
290 |
tttattgcagtttcaaagtgcacataaaatattt |
323 |
Q |
| |
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| T |
37982362 |
tttattgcagtttcaaagtgcacagaaaatattt |
37982395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 394
Target Start/End: Original strand, 37982391 - 37982419
Alignment:
| Q |
366 |
tatttcatcttttgaatatcatggtgtaa |
394 |
Q |
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| T |
37982391 |
tatttcatcttttgaatatcatggtgtaa |
37982419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 9406222 - 9406091
Alignment:
| Q |
47 |
accactgtgcctgtttttgcattacttgtaaattgtcatcagaggttatatatcttggttgtgtgatagaagaaccaatgtgaagcttttatgtcttgga |
146 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
9406222 |
accactgtgcctgtttttacattacttgacaattgtcatcagaggttgtatatcttggttgtgtgatagaagaaccaatgtgaagctttcttgtgttgga |
9406123 |
T |
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| Q |
147 |
gatgattttaaaatcttgttatttgtgtatac |
178 |
Q |
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| T |
9406122 |
gatgattttaaaattttcttatttgtgtatac |
9406091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 177
Target Start/End: Complemental strand, 9424452 - 9424335
Alignment:
| Q |
47 |
accactgtgcctgtttttgcattacttgtaaattgtcatcagaggttatatatcttggttgtgtgatagaagaaccaatgtgaagcttttatgtcttgga |
146 |
Q |
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| T |
9424452 |
accactgtgcctgtttttgcattacttgacaattgtcatcagaggtt-------------gtgtgatagaagaaccaatgtgaagctttcttgtgatgga |
9424366 |
T |
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| Q |
147 |
gatgattttaaaatcttgttatttgtgtata |
177 |
Q |
| |
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|||||||||||||| || ||||||||||||| |
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| T |
9424365 |
gatgattttaaaattttcttatttgtgtata |
9424335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 9406091 - 9406009
Alignment:
| Q |
203 |
caaggaaaatgaatgatggaatattgcatagggtttagtataaaaa----gtcatctaatttgttttatgtttttcatcttttga |
283 |
Q |
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| T |
9406091 |
caaggaaaatggatgatggaatattgcat--ggtttagtataaaaaactagtcatctattttgttttatatttttcatcttttga |
9406009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 283
Target Start/End: Complemental strand, 9424333 - 9424252
Alignment:
| Q |
204 |
aaggaaaatgaatgatggaatattgcatagggtttagtataaaaa----gtcatctaatttgttttatgtttttcatcttttga |
283 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||| |
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| T |
9424333 |
aaggaaaatggatgatggaatattgcat--ggtttagtataaaaaactagtcatctattttgttttatatttttcatcttttga |
9424252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 9394738 - 9394683
Alignment:
| Q |
123 |
aatgtgaagcttttatgtcttggagatgattttaaaatcttgttatttgtgtatac |
178 |
Q |
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||||||||||||| ||| |||||||||||||| |||| || |||||||||||||| |
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| T |
9394738 |
aatgtgaagctttcttgtgttggagatgattttcaaattttcttatttgtgtatac |
9394683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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