View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16707_low_5 (Length: 340)
Name: NF16707_low_5
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 39427100 - 39427402
Alignment:
| Q |
19 |
tcattgaagaacggaagcaacatggatatgacagttgttaaggtgacaaacactgtcctccaaagcattctgaataagttcaacttgtaaggtggaaggc |
118 |
Q |
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| T |
39427100 |
tcattgaagaacggaagcaacatggatataacagttgttaaggtgacaaacactgtcctccaaagcattctgaataagttcaacttgtaaggtggaaggc |
39427199 |
T |
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| Q |
119 |
aaggaagttcaattttgtattctttctcaatgttgggccatctttgtgttgcacttttctctacaaaggcaaagattggttgggaaaatacttgatatgc |
218 |
Q |
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| T |
39427200 |
aaggaagttcaattttgtattctttctcaatgttgggccatctttgtgttgcacttttctctacaaaggcaaagattggttgggaaaatacttgatatgc |
39427299 |
T |
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| Q |
219 |
tcccacaaggtgaactactatagctgcatttgctatgtctattagccaatatggattgtagaatccaaaaccagttagaagatttccaggtgcatcatct |
318 |
Q |
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| T |
39427300 |
tcccacaaggtgaactactatagctgcatttgctatgtctattagccaatatggattgtagaatccaaaaccagttagaagatttccaggtgcatcatct |
39427399 |
T |
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| Q |
319 |
cca |
321 |
Q |
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| T |
39427400 |
cca |
39427402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 55 - 321
Target Start/End: Complemental strand, 6251080 - 6250830
Alignment:
| Q |
55 |
gttaaggtgacaaacactgtcctccaaagcattctgaataagttcaacttgtaaggtggaaggcaaggaagttcaattttgtattctttctcaatgttgg |
154 |
Q |
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| T |
6251080 |
gttaaggtaacaaacactgtcctccaaagcaatctgaataagttcaacttgtaaggtggaaggcaaggaagttgaattttgtattctttgtcaatgttgg |
6250981 |
T |
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| Q |
155 |
gccatctttgtgttgcacttttctctacaaaggcaaagattggttgggaaaatacttgatatgctcccacaaggtgaactactatagctgcatttgctat |
254 |
Q |
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| T |
6250980 |
gccatctttgtgttgcacttttctctacaaagacaaagattggttgagaaaatacttggtattct--------------ta--atagctgcatttgctat |
6250897 |
T |
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| Q |
255 |
gtctattagccaatatggattgtagaatccaaaaccagttagaagatttccaggtgcatcatctcca |
321 |
Q |
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| T |
6250896 |
gtctattagccaatatggattgtagaatccaaaaccagttagaagatttccaggtgcagcatctcca |
6250830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 44314923 - 44314992
Alignment:
| Q |
206 |
atacttgatatgctcccacaaggtgaactactatagctgcatttgctatgtctattagccaatatggatt |
275 |
Q |
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| T |
44314923 |
atacttggtatgctcccacaaggtgaattacgatagcagcattagcaatatcaatgagccaatatggatt |
44314992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 44305246 - 44305323
Alignment:
| Q |
153 |
gggccatctttgtgttgcacttttctctacaaaggcaaagattggttgggaaaatacttgatatgctcccacaaggtg |
230 |
Q |
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| T |
44305246 |
gggccatctttttgctgctcctttctctacgaaggcaaagacaggttgaacatatacttggtatgctcccacaaggtg |
44305323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 27876065 - 27876006
Alignment:
| Q |
262 |
agccaatatggattgtagaatccaaaaccagttagaagatttccaggtgcatcatctcca |
321 |
Q |
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| T |
27876065 |
agccaataggggttatagaatccaaaaccagtcaaaagatttccaggtacatgatctcca |
27876006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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