View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16707_low_6 (Length: 317)
Name: NF16707_low_6
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 1155375 - 1155077
Alignment:
| Q |
1 |
aaacaaagctcaatgagaatggagaaatagataaatacaaagcaagacttgtggaaaaaagatatgctcaacaacatggtgtcaattactatgaagtctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
1155375 |
aaacaaagctcaatgagaatggagaaatagataaatacaaagcaagacttgtggaaaaaagatatgctcaacaacatggtttcgattactatgaagtctt |
1155276 |
T |
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| Q |
101 |
cacaccggcagcaagattagatacaactcgacaaatgcttgcggttactactcaaaggggatgtaaatctatcaattggatgtaaattcagcatttttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1155275 |
cacaccggcagcaagattagatacaactcgactaatgcttgcagttactactcaaaggggatgtaaatctatcaattggatgtaaattcagcatttttgc |
1155176 |
T |
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| Q |
201 |
atggtctactcaatgaataagtgtttgtggaacagccttgcggatatgaaattaacggcaatgggcataaggtgtataagttgaagaatacacttcatg |
299 |
Q |
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| T |
1155175 |
atggtctactcaatgaataagtgtttgtggaacagccttgcggatatgaaattaacggcaatgggcataaggtgtataagttgaagaatacacttcatg |
1155077 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11850128 - 11850181
Alignment:
| Q |
1 |
aaacaaagctcaatgagaatggagaaatagataaatacaaagcaagacttgtgg |
54 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||| || ||||| |||| |
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| T |
11850128 |
aaactaagctcaatgagaatggagagatagataagtacaaggcgagactagtgg |
11850181 |
T |
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