View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16707_low_9 (Length: 298)
Name: NF16707_low_9
Description: NF16707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16707_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 119 - 287
Target Start/End: Original strand, 12144239 - 12144407
Alignment:
| Q |
119 |
gatacagtgacgtgtctatctctctctgggaatatggtatagaaactcatcttaccttgttaattgttgtcccatataagtccttaaagatattgaaagt |
218 |
Q |
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| T |
12144239 |
gatacagtgacgtgtctatctctctctgggaatatggtatagaaactcatcttaccttgttaattgttgtcccatataagtccttaaagatattgaaagt |
12144338 |
T |
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| Q |
219 |
cacacatagctgcttcttacttcttgtgcttaaaattctaacaatgtcatcatcgttaaaagctttctt |
287 |
Q |
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| T |
12144339 |
cacacatagctgcttcttacttcttgtgcttaaaattctaacaatgtcatcatcgttaaaagctttctt |
12144407 |
T |
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Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 12144159 - 12144242
Alignment:
| Q |
14 |
acaattgaaaacaacagattctcactccatgatatccttgattttattgcatgaatttaaattcgtaatatcatttcttcgata |
97 |
Q |
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| T |
12144159 |
acaattgaaaacaacagattctcactccatgatatccttgattttattgcatgaatttaaattcgtaatatcatttcttcgata |
12144242 |
T |
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