View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16708_high_3 (Length: 364)
Name: NF16708_high_3
Description: NF16708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16708_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 42126538 - 42126889
Alignment:
| Q |
1 |
gctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaacca |
100 |
Q |
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| T |
42126538 |
gctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaacca |
42126637 |
T |
|
| Q |
101 |
attcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcg |
200 |
Q |
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| T |
42126638 |
attcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcg |
42126737 |
T |
|
| Q |
201 |
cccaccatttgacaaaggcaattgaatagatggacatttcaggagtaagagcatagtttggcctcaagaaagaatttccaaaaaatgaagtgcaaatgca |
300 |
Q |
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| T |
42126738 |
cccaccatttgacaaaggcaattgaatagatggacatttcaggagtaagagcgtagtttggcctcaagaaagaatttccaaaaaatgaaatgcaaatgca |
42126837 |
T |
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| Q |
301 |
tgtagaagcaatgcaaaggatccaagaaagtggtgccaaggcaagtgaaaat |
352 |
Q |
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| T |
42126838 |
tgtagaagcaatgcaaaggatccaagaaagtggtgccaaggcaagtgaaaat |
42126889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 24929833 - 24930168
Alignment:
| Q |
1 |
gctttgaaccaaaaccccttcagagatgacagcttcatcaccaattgaaactagagacgggtctgtgatgtcaaccgtgtcaatcaaaactgaggaacca |
100 |
Q |
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| T |
24929833 |
gctttgaaccaaaacaccttctgcaacgacagcttcatctccgattgacaccagagttgggtccgtgatgtcaactgtatcaagcagaactgaggatcca |
24929932 |
T |
|
| Q |
101 |
attcttgcaccaagtatctcaaaccagtaattcagaaacacagttcctttgaggtgtgtagccagaactttggaagaaatttcctggcttttataaagcg |
200 |
Q |
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|||||||| || | || ||||||||||| || |||||||| |||||| ||||||||||||||| |||||| || |||||||| || | ||||| |||| |
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| T |
24929933 |
attcttgctcccaacatttcaaaccagtactttagaaacactgttcctctgaggtgtgtagccaaaactttagaggaaatttcttgagtcttatatagcg |
24930032 |
T |
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| Q |
201 |
cccaccatttgacaaaggcaattgaatagatggacatttcaggagtaagagcatagtttggcctcaagaaagaatttccaaaaaatgaagtgcaaatgca |
300 |
Q |
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| T |
24930033 |
cccaccacttgacaaaatccgttgaatagatggagatgtcagaggcatgttcatagtttagccctactaaagaacttccaaacaatgaaatgcaaacgca |
24930132 |
T |
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| Q |
301 |
tgtagaagcaatgcaaaggatccaagaaagtggtgc |
336 |
Q |
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| T |
24930133 |
agtggaagcgatgcaaagaatccaagcaagaggtgc |
24930168 |
T |
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