View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16708_high_6 (Length: 326)
Name: NF16708_high_6
Description: NF16708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16708_high_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 39688998 - 39689312
Alignment:
| Q |
20 |
ttaaaaatatactgccactcaagcatgctaatgaatcattccaactttacgccacaaaagaatatattagtttaattaatttaatctcatccaacaagtg |
119 |
Q |
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| T |
39688998 |
ttaaaaatatactaccactcaagcatgctaatgaatcattccaactttacgccacacaagaatatattagtttaatt----taatctcatccaacaagtg |
39689093 |
T |
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| Q |
120 |
a---ataccaagtatataaatatgtagacatatttgcataagctttatataaatcaaaatgcaaagatatacagaagaattaatactgaatgagatagga |
216 |
Q |
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| T |
39689094 |
atcaataccaagtatataaatatgtagacatatttgcataagctttatataaatcaaaatgcaaagatatacagaagaattaatactgaatgagatagga |
39689193 |
T |
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| Q |
217 |
gagatgaaacaaagtaacaaagggcatgttccagtgctagtagggaaaaag---------gaagaagaagatatggagaggatttgggtgagcatcaaag |
307 |
Q |
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| T |
39689194 |
gagatgaaacaaagtaacaaagggcatgttccagtgctagtaggcaaaaaggaagaagaagaagaagaagatatggagaggatttgggtgagcatcaaag |
39689293 |
T |
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| Q |
308 |
tgattcaccatcccaaaat |
326 |
Q |
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| T |
39689294 |
tgattcaccatcccaaaat |
39689312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 326
Target Start/End: Original strand, 39683563 - 39683847
Alignment:
| Q |
34 |
ccactcaagcatgctaatgaatcattccaactttacgccacaaaagaatatattagtttaattaatttaatctcatccaacaagtgaataccaagtatat |
133 |
Q |
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| T |
39683563 |
ccactcaagcatgctaatgaatgattccaacttcacgccacaaaagaacagattagt----ttaatttaatttcatccaacaagtgaatagcaagtatat |
39683658 |
T |
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| Q |
134 |
aaata----tgtagacatatttgcataagctttatataaatcaaaatgcaaagatatacagaagaattaata-ctgaatgagataggagagatgaaacaa |
228 |
Q |
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| T |
39683659 |
atataacttagtatacatatatgcatatgctctatataaagcaaaagccaaag------agaagaatcaatatttgaattagagagaagatatgaaacaa |
39683752 |
T |
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| Q |
229 |
agtaacaaagggcatgttccagtgctagtagggaaaaaggaagaagaagatatggagaggatttgggtgagcatcaaagtgattcaccatcccaaaat |
326 |
Q |
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| T |
39683753 |
agtaacaaagggcatgttccggtgctagtaagcaaa---ggaggagaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaat |
39683847 |
T |
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