View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16708_low_1 (Length: 438)
Name: NF16708_low_1
Description: NF16708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16708_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 176 - 423
Target Start/End: Original strand, 4697006 - 4697252
Alignment:
| Q |
176 |
tgttttattttgaattgtgttgaggaattataagttcattgtgtgttttgttaatttttcatttgtttgatatgtttatggtataagttgtgattgatgc |
275 |
Q |
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| T |
4697006 |
tgttttattttaaattgtgttgatgaattataagttcattatgtgttttgttaatttttcatgtgtttggtatctttatggtataagttgtgattgatgt |
4697105 |
T |
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| Q |
276 |
atgaaacttacgttttccctaacttatgatagtaatgttgggattcaaaatggaattggttgacatgtgtttggatgagaaaagtaataaatatatggtc |
375 |
Q |
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| T |
4697106 |
atgaaacttcctttttccctaacttatgatagtaatgttgggattcaaaatggaattggttgacatgtgtttggatgag-aaagtaataaatatatggtc |
4697204 |
T |
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| Q |
376 |
aatattacgataaatcctaactcagatgagtagggttccatctttaat |
423 |
Q |
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| T |
4697205 |
aatattacgataaatcctaactcagatgagtagggttccatctttaat |
4697252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 4674306 - 4674471
Alignment:
| Q |
1 |
aatgtcacatgcacattagc-gtttgatgtttttgagtgatataaatatcaagttagggtttaattgggaaaaggtgggaaaggataaattcctatgagt |
99 |
Q |
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| T |
4674306 |
aatgtcagatgcacattaggtgtttgatgtttttgagtgatataaatatgaagttagggtttaattggaaaaaggtgggaaaggataaattcctatgagt |
4674405 |
T |
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| Q |
100 |
tgaggaaagtaaattaattgctaattcatgcatgtatccttaattctagaaaggatttgaagtaat |
165 |
Q |
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| T |
4674406 |
tgaggaaagtaaataaattgctaattcatgcatgtatcgttaattctagaaaagatctgaagtaat |
4674471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 42 - 243
Target Start/End: Original strand, 4641391 - 4641597
Alignment:
| Q |
42 |
taaatatcaagttagggtttaattgggaaaaggtgggaaaggataaa-ttcctatgagttgaggaaagtaaattaa----ttgctaattcatgcatgtat |
136 |
Q |
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| T |
4641391 |
taaatatgaagttagggtttaattggaaaaaagtgggaaaggataaaattcctatgagttgaggaaagtaaattaagttgttactaggtcatgcatgtat |
4641490 |
T |
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| Q |
137 |
ccttaattctagaaaggatttgaagtaattgttcttgcatgttttattttgaattgtgttgaggaattataagttcattgtgtgttttgttaatttttca |
236 |
Q |
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| T |
4641491 |
ccgtaattctagaaacgatattgagtaatagtgcttgcatgtttcattttgaattgtattgacgaattttaagtttattgtgtgttttgttaatcattca |
4641590 |
T |
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| Q |
237 |
tttgttt |
243 |
Q |
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| T |
4641591 |
tgtgttt |
4641597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 4660798 - 4660908
Alignment:
| Q |
172 |
tgcatgttttattttgaattgtgttgaggaattataagttcattgtgtgttttgttaatttttcatttgtttgatatgtttatggtataagttgtgattg |
271 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||| ||||||| |||| |||||||||||| |
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| T |
4660798 |
tgcatgtattattttgaattgtgttgaggaattataagttcattgtgtattttgttaattcttcgtgtgtttggtatgtttgtggttgaagttgtgattg |
4660897 |
T |
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| Q |
272 |
atgcatgaaac |
282 |
Q |
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| T |
4660898 |
atgcatgaaac |
4660908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 4660672 - 4660806
Alignment:
| Q |
1 |
aatgtcacatgcacattagc-gtttgatgtttttgagtgatataaatatcaagttagggtttaattgggaaaaggtgggaaaggataaattcctatgagt |
99 |
Q |
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| T |
4660672 |
aatgtcacatgcacatcaggtgtttgatatttttgagtgatataaa-atgaagttagggtttaattgaaaaaaagtgggaaaggataaattcctatgagg |
4660770 |
T |
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| Q |
100 |
tgaggaaagtaaattaattgctaattcatgcatgtat |
136 |
Q |
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| T |
4660771 |
tgaggaaagtaagttaattgct-atccatgcatgtat |
4660806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 4779449 - 4779528
Alignment:
| Q |
340 |
atgtgtttggatgagaaaagtaataaatatatggtcaatattacgataaatcctaactcagatgagtagggttccatctt |
419 |
Q |
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| T |
4779449 |
atgttttttgatgagaaatgtaatacatatatggtcaatattgcgataaatcctaacttggatgaatagagttccatctt |
4779528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 423
Target Start/End: Original strand, 4660972 - 4661044
Alignment:
| Q |
351 |
tgagaaaagtaataaatatatggtcaatattacgataaatcctaactcagatgagtagggttccatctttaat |
423 |
Q |
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| T |
4660972 |
tgagaaaggtgataaatatatggtcaatattgcgaataatcctaactcggatgaatagagttccatctttaat |
4661044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 345 - 423
Target Start/End: Original strand, 4641977 - 4642055
Alignment:
| Q |
345 |
tttggatgagaaaagtaataaatatatggtcaatattacgataaatcctaactcagatgagtagggttccatctttaat |
423 |
Q |
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| T |
4641977 |
tttggatgagaaaggtaataaatatatggtcaatatcgccataattcttaacttggatgaatagagttccatctttaat |
4642055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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