View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16709_high_14 (Length: 220)
Name: NF16709_high_14
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 51912774 - 51912564
Alignment:
| Q |
1 |
tgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaagnnnnnnnnggcagctcacactcactcacacccctcacttattttcctgccgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912774 |
tgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaa-aaaaaaaaggcagctcacactcactcacacccctcacttattttcctgccgtg |
51912676 |
T |
|
| Q |
101 |
cacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgaggtgaaaataattaataagacaaaaaacaagacac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51912675 |
cacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgaggtgaaaataattaataagacaaaaaacaagacac |
51912576 |
T |
|
| Q |
201 |
ttttttcttttc |
212 |
Q |
| |
|
|||||||||||| |
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|
| T |
51912575 |
ttttttcttttc |
51912564 |
T |
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