View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16709_high_15 (Length: 218)
Name: NF16709_high_15
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 51912923 - 51912752
Alignment:
| Q |
28 |
caacttctaccgcagtacatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912923 |
caacttctaccgcagtacatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattga |
51912824 |
T |
|
| Q |
128 |
gcttgaatgaccactaattggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51912823 |
gcttgaatgaccactaattggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctc |
51912752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University