View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16709_high_2 (Length: 665)
Name: NF16709_high_2
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 559; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 10 - 643
Target Start/End: Complemental strand, 6111271 - 6110639
Alignment:
| Q |
10 |
aacaatatggcatccacttcaagtaatccaccagaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatgagttccacttttttact |
109 |
Q |
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| T |
6111271 |
aacaatatggcatccacttcaagtaatccaccagaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatgagttccacttttttact |
6111172 |
T |
|
| Q |
110 |
aatatttggcttccatacatctatactatacatattcagctcatgaattaagtagtatagcatacaatagaaatttattaaagaacttgttaaagtaagt |
209 |
Q |
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| T |
6111171 |
aatatttggcttccatacatctatactatacatattcagctcatgaattaagtagtatagcatacaatagaaatttcttaaagaacttgttaaagtaagt |
6111072 |
T |
|
| Q |
210 |
caattagatatatattagtgaactagcaaaacgcaagaaaccatagtgctatccaaacaaaaaagaagataaattgggacaatcaagacaacatgacctt |
309 |
Q |
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| T |
6111071 |
caattagatatatattagtgaactagcaaaacgcaagaaaccatagtgctatccaaacaaaaaagaagctaaattgggacaatcaagacaacatgacctt |
6110972 |
T |
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| Q |
310 |
aaacccttga-tgcaacagcataccattatacaaaataagcaaaagtgatcgaagtcacacatgagcaactcctacatacacctattagtggaaaaaatc |
408 |
Q |
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| T |
6110971 |
aaacccttgattgcaacagcataccattatacaaaataagcaaaagtgatcgaagtcacacatgagcaactcccacatacacctattagtggaaaaaatc |
6110872 |
T |
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| Q |
409 |
agactaaacagtctcttaaatacgaaacttctttttacacctatgcaatttaaatatacaaccagccagaaccaatttcaaagcaaaataacaatgtcgc |
508 |
Q |
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| T |
6110871 |
agactaaacagtcacttaaatacgaaacttttttttacacctatgcaatttaaatatacaaccagccagaaccaatttcaaagcaaaataacaatgtcac |
6110772 |
T |
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| Q |
509 |
aaaataaataacagtcaaacacacaacttttaacgtggaactcatttacaattgcctccatttcctctatttgaagagatatagacacnnnnnnnnntta |
608 |
Q |
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| T |
6110771 |
aaaataaataacagtcaaacacacaacttttaaagtggaactcatttacaattgcctccatttcctctatttgaagagataaagacac--aaaaaaatta |
6110674 |
T |
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| Q |
609 |
accaatcaaggctcttgataccactttgttggaag |
643 |
Q |
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| T |
6110673 |
accaatcaagactcttgataccactttgttggaag |
6110639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 6183376 - 6183291
Alignment:
| Q |
10 |
aacaatatggcatccacttcaagtaatccacca---gaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatg |
92 |
Q |
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| T |
6183376 |
aacaacatggcatccacttcaagtaatccaccactagaagctcatgtgattaatagactttattcaacacaatatcaaggtaaatg |
6183291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 6090266 - 6090227
Alignment:
| Q |
10 |
aacaatatggcatccacttcaagtaatccaccagaagctg |
49 |
Q |
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| T |
6090266 |
aacaatatggcatccacttcaagtaatccaccagaagctg |
6090227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 6209831 - 6209748
Alignment:
| Q |
10 |
aacaatatggcatccacttcaagtaatccaccagaagctgctgtgattaatagagtttattcaacacaagatcaaggtaaatga |
93 |
Q |
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| T |
6209831 |
aacaatatggcatccacttcaagtaatccaccatcggaagttgcggttaatagactttattcaacacaatatcgaggtaaatga |
6209748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 6249477 - 6249386
Alignment:
| Q |
105 |
ttactaatatttggcttccatacatctatactatacatattcagctcatgaattaagtag--tatagcatacaatagaaatttattaaagaa |
194 |
Q |
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||||||||||||| |||| | ||| || |||||| ||||||||||||||||||||| | | |||| ||||||||| ||| ||||||||||| |
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| T |
6249477 |
ttactaatatttgacttctaaacaactttactatgcatattcagctcatgaattaacttgcatatatcatacaataaaaagttattaaagaa |
6249386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 6250922 - 6250890
Alignment:
| Q |
10 |
aacaatatggcatccacttcaagtaatccacca |
42 |
Q |
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| T |
6250922 |
aacaacatggcatccacttcaagtaatccacca |
6250890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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