View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16709_low_10 (Length: 265)
Name: NF16709_low_10
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 42564579 - 42564827
Alignment:
| Q |
1 |
cttcaaacattattatcattttccgtgtgtttctgcagcttagaactgggcatatgtctaccattttgatcctgttgtacaagacctctatttcttgaat |
100 |
Q |
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| T |
42564579 |
cttcaaacattactatcattttccgtgtgtttctgcagcttagaactggtcatatgtctaccattttgatcctgttgtacaggacctctatttcttgaat |
42564678 |
T |
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| Q |
101 |
aataagatgtatttactggttttctgttgacactgatgttttttgaggttttctcataaagtggcaaagactcctttaagccggtgtcagaactcaccaa |
200 |
Q |
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| T |
42564679 |
aataagatgtatttactggttttctgttgacactgatgttttttgaggttttttcataaagtggcaaagactcctttaagccggtgtcagaactcaccaa |
42564778 |
T |
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| Q |
201 |
atgacttcttaaggagctgtgatttctctcattataaacatgtaaactg |
249 |
Q |
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| T |
42564779 |
atgacttcttaaggagctgtgatttctctcattataaacatataaactg |
42564827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 50408398 - 50408649
Alignment:
| Q |
7 |
acattattatcattttccgtgtgtttctgcagcttagaactgggcatatgtctaccattttgat---------cctgttgtacaagacctctatttcttg |
97 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||| |||| ||||||||| |
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| T |
50408398 |
acattattatcattttccgtgtgtttttgcagcttagaaccgggcatatgtctaccactttgatgcctctgatcctgttgtactgaacctttatttcttg |
50408497 |
T |
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| Q |
98 |
aataataagatgtatttactggttttctgttgacactgatgttttttgaggttttctcataaagtggcaaagactcctttaagccggtgtcagaactcac |
197 |
Q |
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| T |
50408498 |
aataataagatgtatttactggttttctgttgacactgatgttttttgaggttttctcataaagtggcaaagactcctttaagccgatgtcagaactcac |
50408597 |
T |
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| Q |
198 |
caaatgacttcttaaggagctgtgatttctctcattataaacatgtaaactg |
249 |
Q |
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| T |
50408598 |
caaatgacttcttaaggggctatgatttctctcattataaacatgtaaactg |
50408649 |
T |
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