View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16709_low_14 (Length: 231)
Name: NF16709_low_14
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 17157628 - 17157434
Alignment:
| Q |
20 |
aaatccatattactcaacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgat |
119 |
Q |
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| T |
17157628 |
aaatccatattactcaacgtagccaccaatcatcacgatctcgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagctcagtgat |
17157529 |
T |
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| Q |
120 |
ggccctttctggtctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatggt |
214 |
Q |
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| T |
17157528 |
ggccctttctggtctcaatgattctctgcaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatggt |
17157434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 17161551 - 17161356
Alignment:
| Q |
19 |
gaaatccatattactcaacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtga |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
17161551 |
gaaatccatattactcaacgcagccaccaatcatcacgatctcgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagctcagtga |
17161452 |
T |
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| Q |
119 |
tggccctttctggtctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatggt |
214 |
Q |
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| T |
17161451 |
tggccctttctggtctcaatgattctctgcaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatggt |
17161356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 17164589 - 17164400
Alignment:
| Q |
25 |
catattactcaacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgatggccc |
124 |
Q |
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|||||| ||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17164589 |
catattgctcaacgtagccaaaaatcatcacgatctcgatcattacggatgacacaaaaattaaatgaaagaatttcagctccaagctcagtgatggccc |
17164490 |
T |
|
| Q |
125 |
tttctggtctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatggt |
214 |
Q |
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| T |
17164489 |
tttctggtctcaatgattctctacaaaggggacaagtgtggttcttgaaaccaatccatttatctaaacaatatttgtggtacatatggt |
17164400 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 26399181 - 26399367
Alignment:
| Q |
26 |
atattactcaacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgatggccct |
125 |
Q |
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||||||||||||||| ||||||||||||| | ||| ||||||||| || |||||||||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
26399181 |
atattactcaacgtaaccaccaatcatcatgttctcgatcactataaatattacaaaaattaaatgaaagaacatcaactccaagctcagtgatggccct |
26399280 |
T |
|
| Q |
126 |
ttctggtctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatg |
212 |
Q |
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| ||| ||||||||||||||| ||||| |||||||||| ||||||||||| || |||| |||| ||||||||| | ||| ||||||| |
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| T |
26399281 |
tcctgatctcaatgattctctgcaaagtggacaagtgttgttcttgaaaccaacccatctatccaaacaatatctatgaaacatatg |
26399367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 28153551 - 28153369
Alignment:
| Q |
30 |
tactcaacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgatggccctttct |
129 |
Q |
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|||||| ||||||||||||||||||||||| |||| || | ||| | ||||||||||| ||||| |||||||||||| |||||||| || || | | |
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| T |
28153551 |
tactcagcgtagccaccaatcatcacgatcgcgatccttacgaatggcgaaaaaattaaattcaagaacttcagctccaagctcagtgatagctctcttt |
28153452 |
T |
|
| Q |
130 |
ggtctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatg |
212 |
Q |
| |
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||||||||||||||||| ||||| || ||||||||||| ||||| | || ||||||||| ||||||| ||| ||||||||||| |
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| T |
28153451 |
ggtctcaatgattctctgcaaagagggcaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatg |
28153369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 212
Target Start/End: Complemental strand, 28148894 - 28148714
Alignment:
| Q |
32 |
ctcaacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgatggccctttctgg |
131 |
Q |
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||||||||| ||||||||||||| |||| |||| || | ||| || ||||||||||| ||||| |||||||||||| ||||||||||| || | ||| |
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| T |
28148894 |
ctcaacgtaaccaccaatcatcatgatcacgatccttacgaatggcaaaaaaattaaattcaagaacttcagctccaagctcagtgatggctctctttgg |
28148795 |
T |
|
| Q |
132 |
tctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatg |
212 |
Q |
| |
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|||||| |||||||| ||||| || ||||||||||| ||||| | || ||||||||| ||||||| ||| ||||||||||| |
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| T |
28148794 |
tctcaacgattctctgcaaagagggcaagtgtggtttttgaatccaacccatttatccaaacaatttttatgatacatatg |
28148714 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 25228891 - 25229072
Alignment:
| Q |
31 |
actcaacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgatggccctttctg |
130 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||| | ||| ||||||||| ||||||||||| ||| ||||| | ||||||||||| ||||||| |
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| T |
25228891 |
actcaacgtagccaccaatcatcacgatctcgatcactacgaatggcacaaaaatcaaatgaaagaacttctactccatgctcagtgatggctctttctg |
25228990 |
T |
|
| Q |
131 |
gtctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatg |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
25228991 |
gtctcaatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatacatatg |
25229072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 25217082 - 25217259
Alignment:
| Q |
35 |
aacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgatggccctttctggtct |
134 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||| ||| ||||| | ||||||||||| ||||||||||| |
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| T |
25217082 |
aacgtagccaccaatcatcacgatctctatcactacggatggcacaaaaatcaaatgaaagaacttctactccatgctcagtgatggctctttctggtct |
25217181 |
T |
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| Q |
135 |
caatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatg |
212 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
25217182 |
caatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatacatatg |
25217259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 35 - 212
Target Start/End: Original strand, 25233622 - 25233799
Alignment:
| Q |
35 |
aacgtagccaccaatcatcacgatcttgatcactatggatgacacaaaaattaaatgaaagaatttcagctccaagttcagtgatggccctttctggtct |
134 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||| ||| ||||| | ||||||||||| ||||||||||| |
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| T |
25233622 |
aacgtagccaccaatcatcacgatctctatcactacggatggcacaaaaatcaaatgaaagaacttctactccatgctcagtgatggctctttctggtct |
25233721 |
T |
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| Q |
135 |
caatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacatatg |
212 |
Q |
| |
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|||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
25233722 |
caatgattctctacaaagaggacaagtatggttcttgaaactaagccatttatctaaacaatgtttgtgatacatatg |
25233799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 19317576 - 19317475
Alignment:
| Q |
111 |
ttcagtgatggccctttctggtctcaatgattctctacaaaggggacaagtgtggttcttgaaactaatccatttatctaaacaatatttgtgatacata |
210 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||||||||| ||||||| | | ||||||||| |
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| T |
19317576 |
ttcaatgatgaccctttctggtctcaatgattctctacaaagaggacaagtgtggtttttgaaagcaacccatttatccaaacaatgtctatgatacata |
19317477 |
T |
|
| Q |
211 |
tg |
212 |
Q |
| |
|
|| |
|
|
| T |
19317476 |
tg |
19317475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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