View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16709_low_18 (Length: 211)
Name: NF16709_low_18
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 195
Target Start/End: Original strand, 29671854 - 29672035
Alignment:
| Q |
14 |
cacagatgaaaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcattctttgataaaaccccgaacctcgagactttctcct |
113 |
Q |
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| T |
29671854 |
cacagatgaaaacagaaacactctggtgcatcaatccaaatcatctcagaagaatcttcagcattcttggataaaaccccgaacctcgagactttctcct |
29671953 |
T |
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| Q |
114 |
tatcgtaaacaacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaatt |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671954 |
tatcgtaaacaacaggcgacccaccacggatcatttcacccaatttaaacacaacttgttgatcaggcacaacaacgaaatt |
29672035 |
T |
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