View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16709_low_3 (Length: 482)
Name: NF16709_low_3
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 465
Target Start/End: Original strand, 39768028 - 39768476
Alignment:
| Q |
15 |
actaggataaggtggcaaaattgtagtgaaggaagacactgtatgtgtataatggtgtttcaaatcatcaggtgggcaaaacttgaaatttaatggtgta |
114 |
Q |
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| T |
39768028 |
actaggataaggtggcaaaattgtagtgaaggaagacactgtatgtgtataatggtgtttcaaatcatcaggtgggcaaaacttgaaatttaatggtgta |
39768127 |
T |
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| Q |
115 |
ctgttaggttgtttgctataataaaattgaggattggatctcttgcaattcatgatgttgttggggttcatatcctaaatgaatggagattggagtctcc |
214 |
Q |
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| T |
39768128 |
ctgttaggttgtttgctataacaaaattgaggattggatctcttgcaattcatgatgttgttggggttcatatcctaaatgaatggagattggagtctcc |
39768227 |
T |
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| Q |
215 |
catgtgcttacttcttaatttgaaacatgctacatgaaaagttccatcatgatttcatggtgttgttagactgctatgacatatctcaaaaatatataac |
314 |
Q |
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| T |
39768228 |
catgtgctta---cttaatttgaaacatgctacatgaaaagttccatcatgatttcatggtgttgttagactgctatgacatatctcaaaaatatataac |
39768324 |
T |
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| Q |
315 |
ctttcacatagtatatttttacataaacgaaaattcaattattgaatacacaaagaagattaaaccgtaaataaaatatacgattgaaaaggaaaatgct |
414 |
Q |
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| T |
39768325 |
ctttcacatattatatttttacataaacgagaattcaattattgaatacacaaagaagattaaaccgtaaataaaatatatgattgaaaaggaaaatgct |
39768424 |
T |
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| Q |
415 |
acgtcaaaag-ttttatatcgtattgattttatgtgtattaaagctgatttt |
465 |
Q |
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| T |
39768425 |
atgtcaaaagtttttatatcgtatagattttatgtgtattaaagctgatttt |
39768476 |
T |
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