View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16709_low_6 (Length: 370)
Name: NF16709_low_6
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 4910930 - 4910589
Alignment:
| Q |
19 |
agtctaacctcttctattgaactcaatccccgttggttcatcaacttttacgattcttactttattatttatacacctcgaacataacactagattttga |
118 |
Q |
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| T |
4910930 |
agtctaacctcttctattgaactcaatccctgttggttcatcaacttttacgattcttactttattatttatacacctcgaacataacactagagtttga |
4910831 |
T |
|
| Q |
119 |
ctggtcccaatagaacacaagttcatgaaagtaaaatatacatgtaattaattaaacatacacatcaatctcaatctatattctgtggggaatgagagat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4910830 |
ctggtcccaatagaacacaagttcatgaaagtaaaatatacatgtaattaattaaacatacacatcaatctcaatctatgttctgtggggaatgagagat |
4910731 |
T |
|
| Q |
219 |
cctaaccaaattattatcacgaacattgcaagatctcttacatgagaaaaaagacatatttttcactaaccttgattcacaaaaactactactaccaggt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4910730 |
cctaaccaaattattatcacgaacattgcaagatctcttacatgagaaaaaagacatgtttttcactaaccttgattcacaaaaactactactaccaggt |
4910631 |
T |
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| Q |
319 |
ctactcatctttttatccctcttaccacttttctgacctttg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4910630 |
ctactcatctttttatccctcttaccacttttctgacttttg |
4910589 |
T |
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