View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16709_low_7 (Length: 317)
Name: NF16709_low_7
Description: NF16709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16709_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 42564602 - 42564461
Alignment:
| Q |
16 |
ggaaaatgataataatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatctgtatgtatcttttataatatataagggtggagtt |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42564602 |
ggaaaatgatagtaatgtttgaaggaaagcccctcataagcattcccttttatattaactcaatctgtatgtatcttttataatatataagggtggagtt |
42564503 |
T |
|
| Q |
116 |
gatgacaaagttaatagtcatccaagtccaaagttaaatttg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42564502 |
gatgacaaagttaatagtcatccaagtccaaagttaaatttg |
42564461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 302
Target Start/End: Complemental strand, 42564366 - 42564319
Alignment:
| Q |
255 |
gttggttccttaattttttcctttgtttatgttgttgatagttgattg |
302 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42564366 |
gttggtttcttaattttttcctttgtttatgttgttgatagttgattg |
42564319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 40914035 - 40913981
Alignment:
| Q |
29 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatctgt |
83 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
40914035 |
aatggttgaaggaaagcccctcagaagcatttccttttattttaactcaatctgt |
40913981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 12718422 - 12718473
Alignment:
| Q |
29 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatc |
80 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
12718422 |
aatggttgaaggaaagcccctcagaagcatttccttttagtctaactcaatc |
12718473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 2887288 - 2887342
Alignment:
| Q |
29 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatctgt |
83 |
Q |
| |
|
|||| |||||||||||||| ||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
2887288 |
aatggttgaaggaaagcccttcagaagtatttccttttattctaactcaatctgt |
2887342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 3147249 - 3147195
Alignment:
| Q |
29 |
aatgtttgaaggaaagcccctcataagcatttccttttatattaactcaatctgt |
83 |
Q |
| |
|
|||| |||||||||||||| ||| ||| |||||||||||| ||||||||||||| |
|
|
| T |
3147249 |
aatggttgaaggaaagcccttcagaagtatttccttttattctaactcaatctgt |
3147195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University