View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16710_high_1 (Length: 656)
Name: NF16710_high_1
Description: NF16710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16710_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 18 - 646
Target Start/End: Complemental strand, 44605077 - 44604448
Alignment:
| Q |
18 |
tctatagtttgtggctctaagccatgcataatgtcaacaaccaaaattgcaatatcacatagacctgaaccccgagaccttaagttattgaatgattcgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44605077 |
tctatagtttgtggctctaagccatgcataatgtcaacaaccaaaattgcaatatcacatagacctgaaccccgagaccttaagttattgaatgattcgt |
44604978 |
T |
|
| Q |
118 |
ggcctggggtatcaataaccagtagaccgggaacttccagcgttgcatcagctttcagttccttagttctatcacgtatgttctcggcaggaaagtaagt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44604977 |
ggcctggggtatcaataaccagtagaccgggaacttccagcgttgcatcagctttcagttccttagttctatcacgtatgttctcggcaggaaagtaagt |
44604878 |
T |
|
| Q |
218 |
tgcaccaatttgttg-gtgataccaccagcctcaccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtccacatgaccc |
316 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44604877 |
tgcaccaatttgttgagtgataccaccagcctcaccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtccacatgaccc |
44604778 |
T |
|
| Q |
317 |
atgatgcagcaaattggtgaccggaggttactatcactcggcttagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcctcaaccacaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44604777 |
atgatgcagcaaattggtgaccggaggttactatcactcggcctagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcctcaaccacaa |
44604678 |
T |
|
| Q |
417 |
ctttggcgtcttctctatcttcagtttcttcagccacaggcttcgaaacagtttgatttttagcagcttctatggagacatacagagtgttagcaacnnn |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
44604677 |
ctttggcgtcttctctatcttcagtttcttcagccacaggcttcgaaacagtttgatttttagcagcttctatggagacatacagagtgttaacaacaaa |
44604578 |
T |
|
| Q |
517 |
nnnntggtatcaagtaattacacaaattccaagcatatagaagtacaaactagcaataaaatgcaaatctcaccaggattacaaagctgcctcctgattg |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44604577 |
aaaatggtatcaagtaattacacaaattccaagtatatagaagtacaaactagcaataaaatgcaaatctcaccaggattacaaagctgcctcctgattg |
44604478 |
T |
|
| Q |
617 |
catcaaaacgctctgcttgttctctctgct |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
44604477 |
catcaaaacgctctgcttgttctctctgct |
44604448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 481
Target Start/End: Complemental strand, 44626842 - 44626378
Alignment:
| Q |
18 |
tctatagtttgtggctctaagccatgcataatgtcaacaaccaaaattgcaatatcacatagacctgaaccccgagaccttaagttattgaatgattcgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
44626842 |
tctatagtttgtggctctaagccatgcataatgtccacaaccaaaattgcaatatcacatagacctgaaccccgagacctcaagttattgaatgactcgt |
44626743 |
T |
|
| Q |
118 |
ggcctggggtatcaataaccagtagaccgggaacttccagcgttgcatcagctttcagttccttagttctatcacgtatgttctcggcaggaaagtaagt |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| || |
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|
| T |
44626742 |
gtcctggggtatcaataaccagtagaccgggaactttcagtgttgcatcagctttcagttccttggttctttcacgtatgttctcagcaggaaagtacgt |
44626643 |
T |
|
| Q |
218 |
tgcaccaatttgtt-ggtgataccaccagcctcaccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtccacatgaccc |
316 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
44626642 |
tgcaccaatctgttgggtgataccaccagcctcaccttcttgaacattggtacctcgaatgcaatccagaagcttggttttgccagtgtccacatgaccc |
44626543 |
T |
|
| Q |
317 |
atgatgcagcaaattggtgaccggaggttactatcactcggcttagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcctcaaccacaa |
416 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | |||||||||||||||||||| || | | |||||| |||||||| || ||||| ||||||||||||| |
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|
| T |
44626542 |
atgatgcagcaaattggcgaccgaaggttcccttcactcggcttagaaggcacggctgacagttgtggatcgtgctttttctttttatcctcaaccacaa |
44626443 |
T |
|
| Q |
417 |
ctttggcgtcttctctatcttcagtttcttcagccacaggcttcgaaacagtttgatttttagca |
481 |
Q |
| |
|
|||| || | || ||||||||||||||||||||| ||||||| | ||||| || |||| ||||| |
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|
| T |
44626442 |
ctttagcctgttttctatcttcagtttcttcagctgcaggctttgtaacaggtttatttgtagca |
44626378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 182529 - 182403
Alignment:
| Q |
18 |
tctatagtttgtggctctaagccatgcataatgtcaacaaccaaaattgcaatatcacatagacctgaaccccgagaccttaagttattgaatgattcgt |
117 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| ||| || ||||||||||||||| || |
|
|
| T |
182529 |
tctacagtttctgggtctaagccatgcataatatctacaaccaaaattgcaatatcacatagacttgaaccccaagaaattgagttattgaatgattggt |
182430 |
T |
|
| Q |
118 |
ggcctggggtatcaataaccagtagac |
144 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
182429 |
ggcctggggtatcaataaccagtagac |
182403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 251 - 448
Target Start/End: Complemental strand, 182349 - 182152
Alignment:
| Q |
251 |
ccttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtccacatgacccatgatgcagcaaattggtgaccggaggttactat |
350 |
Q |
| |
|
|||||||||| ||| |||||||||||| | |||||||||||||||| |||| || |||| ||| |||||||||||||| || ||||| ||||| | || |
|
|
| T |
182349 |
ccttcttgaaaattgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatgatgcagcaaataggcgaccgtaggttcccat |
182250 |
T |
|
| Q |
351 |
cactcggcttagaaggcacagcagcctgttgtgtatcgtgctcttcgtttttctcctcaaccacaactttggcgtcttctctatcttcagtttcttca |
448 |
Q |
| |
|
||| ||||||| |||||||||||| ||||||| ||| || | || ||||| |||||||||||||||||||| | | |||||||| |||||||||| |
|
|
| T |
182249 |
cacccggcttacaaggcacagcagagtgttgtgaatcatggtttttctttttgtcctcaaccacaactttggcctgctttctatcttgagtttcttca |
182152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 593587 - 593657
Alignment:
| Q |
17 |
atctatagtttgtggctctaagccatgcataatgtcaacaaccaaaattgcaatatcacatagacctgaac |
87 |
Q |
| |
|
||||||||||||| ||| || ||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
593587 |
atctatagtttgttgctgtatgccatgcataatgtctacaaccaaaattgcgatatcacatagacctgaac |
593657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 250 - 374
Target Start/End: Original strand, 593752 - 593876
Alignment:
| Q |
250 |
accttcttgaacatttgtacctcgaatacaatccagaagcttggttttgccagcgtccacatgacccatgatgcagcaaattggtgaccggaggttacta |
349 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| |||||| |||||||||| | | ||| ||||||||||| |||||| || ||||||||||| | | |
|
|
| T |
593752 |
accttgttgaacattactacctcgaatacaatgaagaagcatggttttgccggaggatgcatcacccatgatgctgcaaataggcgaccggaggttccca |
593851 |
T |
|
| Q |
350 |
tcactcggcttagaaggcacagcag |
374 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
593852 |
gcactcggcttagaaggaacagcag |
593876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 29220213 - 29220284
Alignment:
| Q |
20 |
tatagtttgtggctctaagccatgcataatgtcaacaaccaaaattgcaatatc-acatagacctgaacccc |
90 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29220213 |
tatagtttgtggctcgcagccacgcataatgttaacaaccaaaattgcaatatcaacatagacttgaacccc |
29220284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 3014173 - 3014133
Alignment:
| Q |
40 |
catgcataatgtcaacaaccaaaattgcaatatcacataga |
80 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3014173 |
catgcataatgtcaacaaccaaaatagcaatatcacataga |
3014133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 40672520 - 40672570
Alignment:
| Q |
40 |
catgcataatgtcaacaaccaaaattgcaatatcacatagacctgaacccc |
90 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
40672520 |
catgcataatgtcaacaaccaaaatagcaatatcacatagatatgaacccc |
40672570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 41371256 - 41371201
Alignment:
| Q |
46 |
taatgtcaacaaccaaaattgcaatatcacatagacctgaaccccgagaccttaag |
101 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || |||| ||| || ||||| |
|
|
| T |
41371256 |
taatgtcaacaaccaagattgcaatatcacatagagctaaacctcgatactttaag |
41371201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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