View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16710_high_2 (Length: 502)
Name: NF16710_high_2
Description: NF16710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16710_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 84 - 481
Target Start/End: Original strand, 1450703 - 1451101
Alignment:
| Q |
84 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgcctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1450703 |
ttaacaaagtcattcttcctaataggtactcttttcttttgctgcacaatgggagtgtctgttaggtaccaagtcttatagaacaagaccctctcgctgt |
1450802 |
T |
|
| Q |
184 |
ggtggatgatcaggttatagcctttcattagtcagtagttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1450803 |
ggtggatgatcaggttatagcctttcattagtcagtacttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagaca |
1450902 |
T |
|
| Q |
284 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatag-tttttgagtgtatggatttattgcataggataggtagatattatatcgtgtaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1450903 |
ttttaaatgtttgattaagcattacttcttgaatttgttagtatagttttttgagtgcatggatttattgcataggataggtagatattatatcgtgtaa |
1451002 |
T |
|
| Q |
383 |
atatggatatgatatcctgtacnnnnnnnattgattgttttaagcctatgtaagagatcttgttgtataattgagacacacagtatttgacatatgtgt |
481 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1451003 |
atatggatatgatatcctgtactttttttattgattgttttaagcctatataagagatcttgttgtataattgagacacacagtatttgacatatgtgt |
1451101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 35034494 - 35034542
Alignment:
| Q |
128 |
cacaatgggagtgcctgttaggtaccaagtcttatagaacaagaccctc |
176 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| |||||||||||||| |
|
|
| T |
35034494 |
cacaatgggagtgcttgttaggtactgagacttaaagaacaagaccctc |
35034542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 332
Target Start/End: Original strand, 52473849 - 52473984
Alignment:
| Q |
198 |
ttatagcctttcattagtcagt--agttgatatgttgtcattgactactttgttgacataattcagttcagttgtattagacaagacattttaaatgttt |
295 |
Q |
| |
|
||||||| ||||||||||| || |||||| || ||| |||||||| ||| || ||||||| ||||||| || ||||||||||||| |||||| ||| |
|
|
| T |
52473849 |
ttatagcttttcattagtctgtgcagttgacatcttgccattgactggttttctg-cataatttagttcagctgcattagacaagacaatttaaagtttt |
52473947 |
T |
|
| Q |
296 |
gattaagcattacttcttgaatttgttagtatagttt |
332 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52473948 |
gattaagtattacttcttgaatttgttagtatagttt |
52473984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University