View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16710_low_11 (Length: 227)

Name: NF16710_low_11
Description: NF16710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16710_low_11
NF16710_low_11
[»] chr1 (29 HSPs)
chr1 (17-206)||(11882138-11882327)
chr1 (17-206)||(11891372-11891561)
chr1 (73-206)||(11905031-11905164)
chr1 (73-206)||(11904935-11905068)
chr1 (132-206)||(11905127-11905201)
chr1 (17-123)||(11882029-11882135)
chr1 (17-123)||(11891263-11891369)
chr1 (17-202)||(52819008-52819193)
chr1 (17-123)||(11904826-11904932)
chr1 (160-206)||(52818959-52819005)
chr1 (133-206)||(52820951-52821024)
chr1 (139-195)||(11882005-11882061)
chr1 (139-195)||(11891239-11891295)
chr1 (73-197)||(52818920-52819044)
chr1 (139-202)||(11904795-11904858)
chr1 (73-123)||(11882125-11882175)
chr1 (73-123)||(11891359-11891409)
chr1 (148-201)||(11879786-11879839)
chr1 (133-206)||(11880021-11880094)
chr1 (133-198)||(11889773-11889838)
chr1 (133-197)||(11882099-11882163)
chr1 (133-197)||(11891333-11891397)
chr1 (17-57)||(11904796-11904836)
chr1 (148-206)||(11889573-11889631)
chr1 (148-201)||(11902478-11902531)
chr1 (133-206)||(11902521-11902594)
chr1 (139-200)||(11902575-11902636)
chr1 (139-200)||(11905181-11905242)
chr1 (148-200)||(11880075-11880127)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 11882327 - 11882138
Alignment:
Q  17 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttatagtagtatggtggaggaggggacgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11882327 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttgtagtagtatggtggaggaggggacgg 11882228  T
Q  117 ggatggtnnnnnnnntgacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11882227 ggatggtgggggtggtgacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 11882138  T

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Target: chr1; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 11891561 - 11891372
Alignment:
Q  17 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttatagtagtatggtggaggaggggacgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11891561 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttgtagtagtatggtggaggaggggacgg 11891462  T
Q  117 ggatggtnnnnnnnntgacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891461 ggatggtgggggtggtgacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 11891372  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 11905164 - 11905031
Alignment:
Q  73 ggtggaggtggagacttatagtagtatggtggaggaggggacggggatggtnnnnnnnntgacttataataataaggtggtgggggagatggtgatggtg 172  Q
    ||||||||||| |||||||| |||||||||||||||||||| |||||||||        ||||||||| ||||| ||||| || || ||||| |||||||    
T  11905164 ggtggaggtggggacttataatagtatggtggaggaggggatggggatggtggagctggtgacttatagtaatatggtggaggaggggatggggatggtg 11905065  T
Q  173 gaggtggagacttataatagtatggtggaggagg 206  Q
    ||||||| ||||||||||||||||||||||||||    
T  11905064 gaggtggtgacttataatagtatggtggaggagg 11905031  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 11905068 - 11904935
Alignment:
Q  73 ggtggaggtggagacttatagtagtatggtggaggaggggacggggatggtnnnnnnnntgacttataataataaggtggtgggggagatggtgatggtg 172  Q
    ||||||||||| |||||||| ||||||||||||||||| || || ||||||        |||||| ||||| || |||||||| ||||||||||||||||    
T  11905068 ggtggaggtggtgacttataatagtatggtggaggaggagatggagatggtggaggtggtgacttgtaatagtatggtggtggtggagatggtgatggtg 11904969  T
Q  173 gaggtggagacttataatagtatggtggaggagg 206  Q
    |||| || ||||| ||||||||||||||||||||    
T  11904968 gagggggggacttgtaatagtatggtggaggagg 11904935  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 132 - 206
Target Start/End: Complemental strand, 11905201 - 11905127
Alignment:
Q  132 tgacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    |||||||||||| ||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  11905201 tgacttataatagtaaggtggtggtggagctggtgacggtggaggtggggacttataatagtatggtggaggagg 11905127  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 11882135 - 11882029
Alignment:
Q  17 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttatagtagtatggtggaggaggggacgg 116  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| |||| ||| |||||||| ||||| || || || || |||||||||||||| ||    
T  11882135 atggtgatggtgggggtggtgacttatagtagtatggagggtgtgaaatttgttttggtggaggaggagatttgtaataataaggtggaggaggggatgg 11882036  T
Q  117 ggatggt 123  Q
     ||||||    
T  11882035 tgatggt 11882029  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 11891369 - 11891263
Alignment:
Q  17 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttatagtagtatggtggaggaggggacgg 116  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||| |||| ||| |||||||| ||||| || || || || |||||||||||||| ||    
T  11891369 atggtgatggtgggggtggtgacttatagtagtatggagggtgtgaaatttgttttggtggaggaggagatttgtaataataaggtggaggaggggatgg 11891270  T
Q  117 ggatggt 123  Q
     ||||||    
T  11891269 tgatggt 11891263  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 202
Target Start/End: Original strand, 52819008 - 52819193
Alignment:
Q  17 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttatagtagtatggtggaggaggggacgg 116  Q
    ||||||||||||| ||||||||||||||||  |||||||| | || || |||||||||||| || ||||| | ||| |||||||||||||| ||||| ||    
T  52819008 atggtgatggtggtggtggtgacttatagtagtatggagggtttggtaattctttaggtgggggaggagaatgataatagtatggtggaggtggggatgg 52819107  T
Q  117 ggatggtnnnnnnnntgacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggag 202  Q
     |||||          || || ||||| || || || || || ||||| |||||||||||||| |||||||| |||||||||||||    
T  52819108 tgatggcggtgggggagatttgtaatagtatggagggggaggtgatggggatggtggaggtggtgacttatagtagtatggtggag 52819193  T

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Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 11904932 - 11904826
Alignment:
Q  17 atggtgatggtgggggtggtgacttatagttatatggaggatgtgatatttctttaggtggaggtggagacttatagtagtatggtggaggaggggacgg 116  Q
    |||| |||||||||||||||||||||||||  |||||||| ||||| || ||||| |||||||| ||||| || || || || |||||||||||||| ||    
T  11904932 atggggatggtgggggtggtgacttatagtagtatggagggtgtgaaatctctttcggtggaggaggagatttgtaataataaggtggaggaggggatgg 11904833  T
Q  117 ggatggt 123  Q
     ||||||    
T  11904832 tgatggt 11904826  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 52818959 - 52819005
Alignment:
Q  160 gatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  52818959 gatggtgatggtggaggtggtgacttataatagtatggtggaggagg 52819005  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 52820951 - 52821024
Alignment:
Q  133 gacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    ||||| |||||||| |||||||| ||||||||||| ||||| || ||||| |||||||| |||||||| |||||    
T  52820951 gacttgtaataatagggtggtggaggagatggtgaaggtggtggaggagatttataataatatggtggtggagg 52821024  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 11882061 - 11882005
Alignment:
Q  139 taataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtat 195  Q
    |||||||||||||| || || |||||||||||||||||||| ||||| |||||||||    
T  11882061 taataataaggtggaggaggggatggtgatggtggaggtggggacttgtaatagtat 11882005  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 11891295 - 11891239
Alignment:
Q  139 taataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtat 195  Q
    |||||||||||||| || || |||||||||||||||||||| ||||| |||||||||    
T  11891295 taataataaggtggaggaggggatggtgatggtggaggtggggacttgtaatagtat 11891239  T

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Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 52818920 - 52819044
Alignment:
Q  73 ggtggaggtggagacttatagtagtatggtggaggaggggacggggatggtnnnnnnnntgacttataataataaggtggtgggggagatggtgatggtg 172  Q
    ||||| || ||||| ||||| |||||||| || |||||||| || ||||||        |||||||||||| || ||||| || || |||||||||||||    
T  52818920 ggtggtggaggagatttataatagtatggagggggaggggatggtgatggtggaggtggtgacttataatagtatggtggaggaggggatggtgatggtg 52819019  T
Q  173 gaggtggagacttataatagtatgg 197  Q
    | ||||| |||||||| ||||||||    
T  52819020 gtggtggtgacttatagtagtatgg 52819044  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 11904858 - 11904795
Alignment:
Q  139 taataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggag 202  Q
    |||||||||||||| || || |||||||||||||| ||||| |||||||| |||||||| ||||    
T  11904858 taataataaggtggaggaggggatggtgatggtgggggtggtgacttatagtagtatggaggag 11904795  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 11882175 - 11882125
Alignment:
Q  73 ggtggaggtggagacttatagtagtatggtggaggaggggacggggatggt 123  Q
    |||||||||||||||||||| ||||||||||||||||| || || ||||||    
T  11882175 ggtggaggtggagacttataatagtatggtggaggaggtgatggtgatggt 11882125  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 11891409 - 11891359
Alignment:
Q  73 ggtggaggtggagacttatagtagtatggtggaggaggggacggggatggt 123  Q
    |||||||||||||||||||| ||||||||||||||||| || || ||||||    
T  11891409 ggtggaggtggagacttataatagtatggtggaggaggtgatggtgatggt 11891359  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 11879839 - 11879786
Alignment:
Q  148 ggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtgga 201  Q
    |||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||    
T  11879839 ggtggtggaggagatggtgaaggtggtggtggggacttgtaatagtatggtgga 11879786  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 11880094 - 11880021
Alignment:
Q  133 gacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||| ||||| ||||||||||| |||||    
T  11880094 gacttgtaatagtaaggtggtggtggagagggtgacggtggtgggggagatttatagtagtatggtggtggagg 11880021  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 11889838 - 11889773
Alignment:
Q  133 gacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggt 198  Q
    ||||| ||||| || |||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||    
T  11889838 gacttgtaatagtatggtggtggaggagatggtgaaggtggtggtggggacttgtaatagtatggt 11889773  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 11882163 - 11882099
Alignment:
Q  133 gacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatgg 197  Q
    ||||||||||| || ||||| || || |||||||||||||| ||||| |||||||| ||||||||    
T  11882163 gacttataatagtatggtggaggaggtgatggtgatggtgggggtggtgacttatagtagtatgg 11882099  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 11891397 - 11891333
Alignment:
Q  133 gacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatgg 197  Q
    ||||||||||| || ||||| || || |||||||||||||| ||||| |||||||| ||||||||    
T  11891397 gacttataatagtatggtggaggaggtgatggtgatggtgggggtggtgacttatagtagtatgg 11891333  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11904836 - 11904796
Alignment:
Q  17 atggtgatggtgggggtggtgacttatagttatatggagga 57  Q
    ||||||||||||||||||||||||||||||  |||||||||    
T  11904836 atggtgatggtgggggtggtgacttatagtagtatggagga 11904796  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 11889631 - 11889573
Alignment:
Q  148 ggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    |||||||||||||||||||| ||||| ||||| || || |||||||| ||||| |||||    
T  11889631 ggtggtgggggagatggtgaaggtggcggtggggatttgtaatagtaaggtgggggagg 11889573  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 11902531 - 11902478
Alignment:
Q  148 ggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtgga 201  Q
    |||||||| ||||||||||| || || ||||| ||||| |||||||||||||||    
T  11902531 ggtggtggaggagatggtgaagggggtggtggggacttgtaatagtatggtgga 11902478  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 11902594 - 11902521
Alignment:
Q  133 gacttataataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtggaggagg 206  Q
    ||||| ||||| |||||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||||| |||||    
T  11902594 gacttgtaatagtaaggtgggggtggagagggtgagggtggtgggggagatttatagtagtatggtggtggagg 11902521  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11902636 - 11902575
Alignment:
Q  139 taataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtgg 200  Q
    ||||| || |||||||| ||||||||||| ||||| || |||||||| |||||||| |||||    
T  11902636 taatagtatggtggtggaggagatggtgaaggtggtggaggagacttgtaatagtaaggtgg 11902575  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 11905242 - 11905181
Alignment:
Q  139 taataataaggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtgg 200  Q
    |||||||| || || || || |||||||||||||| ||||| |||||||||||||| |||||    
T  11905242 taataatatggagggggaggggatggtgatggtgggggtggtgacttataatagtaaggtgg 11905181  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 11880127 - 11880075
Alignment:
Q  148 ggtggtgggggagatggtgatggtggaggtggagacttataatagtatggtgg 200  Q
    |||||||| ||||||||||| ||||| || |||||||| |||||||| |||||    
T  11880127 ggtggtggaggagatggtgaaggtgggggaggagacttgtaatagtaaggtgg 11880075  T

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