View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16710_low_13 (Length: 207)
Name: NF16710_low_13
Description: NF16710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16710_low_13 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 7901655 - 7901459
Alignment:
| Q |
9 |
aaacttcacctatatgtatttaattgattcgtgaaattcagctaccaatgaatcgacatgttgtattgtgcatggttggtaacgttgacaaacacttgat |
108 |
Q |
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| T |
7901655 |
aaacttcacctat--gtatttaattgatttgtgaaattcagctaccaatgaatcgacatgttgtattgtgcatggttggtaacgttgacaaacacttgat |
7901558 |
T |
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| Q |
109 |
ctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacattcttcacttgaatct |
207 |
Q |
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| T |
7901557 |
ctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacattcttcacttgaatct |
7901459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 7891123 - 7891023
Alignment:
| Q |
107 |
atctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacattcttcacttgaatc |
206 |
Q |
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| T |
7891123 |
atctccttctgtagcataaattgttggccctggatacctcccatttactgttacaattggttttgcatggcatagcctactcacattcttcatttgaatc |
7891024 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
7891023 |
t |
7891023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 31213637 - 31213499
Alignment:
| Q |
69 |
ttgtattgtgcatggttggtaacgttgacaaacacttgatctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggtt |
168 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31213637 |
ttgtattgtgcatggttggtaacgttgacaagcacttgatctccctccctggcattgatagttggccctggaaacctcccatttaccgttacaatgggtt |
31213538 |
T |
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| Q |
169 |
ttgcatggcacagtctactcacattcttcacttgaatct |
207 |
Q |
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| T |
31213537 |
ttgcatggcacaatctactcacattcttatcttgaatct |
31213499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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