View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16710_low_3 (Length: 427)
Name: NF16710_low_3
Description: NF16710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16710_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 5576402 - 5576806
Alignment:
| Q |
20 |
gacggaggtagtataacttattgattgagcttacaagtcactagagagacccaaaacatcaaaatcagtttggttagttattggcacactaagcaacc-a |
118 |
Q |
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| T |
5576402 |
gacggaggtagtataacttattgattgagcttacaagtcactagagagacccaaaacatcaaaatcagtttggttagttattggcacactatgcaaccta |
5576501 |
T |
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| Q |
119 |
actaacttggttagttaattacatgcgcaccaagtaac-taactaacgtaactactatttgaattgc----accgtatacaagacttctagaatattaat |
213 |
Q |
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| T |
5576502 |
actaacttggttagttaattacgtgcgcaccaagtaacctaactaacgtaactactatttgaattgcttgcactgtatacaagacttctagaatattaat |
5576601 |
T |
|
| Q |
214 |
ttgaattacactccgtaactctatcttaattcatattctctaggttgaacatatttagcatatatccttgaannnnnnnnatcttaaaggggttggttag |
313 |
Q |
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| T |
5576602 |
ttgaattacactccgtaactctatcttaattcatattctctaggttgaacatatttagcatatatccttgaa-tttttttatcttaaaggggttggttag |
5576700 |
T |
|
| Q |
314 |
aacacgtgcagcttgatcacttgtcctgcagtaggttagaatgatcttgaccttgttcacatgatcctctagaaagtgaaatttggtttctatgtgcttt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5576701 |
aacacgtgcagcttgatcacttgtcctgcagtaggttagaatgatcttgaccttgttcacatgatcctctagaaagtgaaatttggtttctatgtgcttg |
5576800 |
T |
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| Q |
414 |
cttctc |
419 |
Q |
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| T |
5576801 |
cttctc |
5576806 |
T |
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