View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16710_low_7 (Length: 305)
Name: NF16710_low_7
Description: NF16710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16710_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 34238307 - 34238522
Alignment:
| Q |
22 |
ctttgctctacgaaccataattgttggttaaccacctataaaaattaagctagaaaatctatcctacaaaattcaagatcgaagaaagaggggtctttaa |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34238307 |
ctttgctctacgaaccataattgttggttaactacctataaaaattaagctagaaaatctatcctacaaaattcaaggtcgaagaaagaggggtctttaa |
34238406 |
T |
|
| Q |
122 |
ctaagataaccaaaactgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaagggaagaagataaaaacgggtctt--gttgaga |
219 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
34238407 |
ctaagataaccaaaattgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaatggaagaagataaaaacgggtcttcagttgaga |
34238506 |
T |
|
| Q |
220 |
aaatcaaactatgaat |
235 |
Q |
| |
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||| |||||||||||| |
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| T |
34238507 |
aaaccaaactatgaat |
34238522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 20423424 - 20423207
Alignment:
| Q |
22 |
ctttgctctacgaaccataattgttggttaaccacctataaaaattaagctagaaaatctatcctacaaaattcaagatcgaagaaagaggggtctttaa |
121 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20423424 |
ctttgctctatgaaccataattgttggttaactacctataaaaatttagctagaaaatctatcctacaaaattcaaggtcgaagaaagaggggtctttaa |
20423325 |
T |
|
| Q |
122 |
ctaagataaccaaaactgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaagggaagaagataaaaacgggtctt--gttgaga |
219 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
20423324 |
ctaagataaccaaaactgtaaatgagtttcaacttgattgaaaaattcatggctgccggatctggaatggaagaagataaaaacgggtctttagttgaga |
20423225 |
T |
|
| Q |
220 |
aaatcaaactatgaatgg |
237 |
Q |
| |
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||| |||||||||||||| |
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| T |
20423224 |
aaaccaaactatgaatgg |
20423207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 50303315 - 50303367
Alignment:
| Q |
239 |
tgagaattgtaaggttcagatctgaatagtttattttaatccaacggttgtcct |
292 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
50303315 |
tgagaattgtaaggttca-atctgaagagtttattttaatccaacggttgtcct |
50303367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 10470582 - 10470365
Alignment:
| Q |
22 |
ctttgctctacgaaccataattgttggttaaccacctataaaaattaagctagaaaatctatcctacaaaattcaagatcgaagaaagaggggtctttaa |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10470582 |
ctttgctctatgaaccataattgttggttaactacctataaaaattaagctagaaaatctatcctacaaaattcaaggtcgaagaaagaggggtctttaa |
10470483 |
T |
|
| Q |
122 |
ctaagataaccaaaactgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaagggaagaagataaaaacgggtctt--gttgaga |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
10470482 |
ctaagataaccaaaactataaatgggtttcaacttgattgaaaaattcatggctgtcggatctggaatagaagaagataaaaacgggtctttagttgaga |
10470383 |
T |
|
| Q |
220 |
aaatcaaactatgaatgg |
237 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
10470382 |
aaaccaaactatgaatgg |
10470365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 43511423 - 43511301
Alignment:
| Q |
114 |
gtctttaactaagataaccaaaactgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaagggaagaagataaaaacgggtctt- |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
43511423 |
gtctttaactaagataaccaaaactgtaaatgggtttcaacttgattgaaaaattcatggct---cgatctggaatggaagaagataaaaacgggtcttt |
43511327 |
T |
|
| Q |
213 |
-gttgagaaaatcaaactatgaatgg |
237 |
Q |
| |
|
|||||||||| |||||||||||||| |
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| T |
43511326 |
agttgagaaaaccaaactatgaatgg |
43511301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 43512036 - 43511936
Alignment:
| Q |
22 |
ctttgctctacgaaccataattgttggttaaccacctataaaaattaagctagaaaatctatcctacaaaattcaagatcgaagaaagaggggtctttaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
43512036 |
ctttgctctacgaaccataattgttggttaactacctataaaaattaagttagaaaatatatcctacaaaattcaaggtcgaagaaagaggggtctttaa |
43511937 |
T |
|
| Q |
122 |
c |
122 |
Q |
| |
|
| |
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|
| T |
43511936 |
c |
43511936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 25746726 - 25746778
Alignment:
| Q |
239 |
tgagaattgtaaggttcagatctgaatagtttattttaatccaacggttgtcct |
292 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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|
| T |
25746726 |
tgagaattgtaaggttca-atctgaagagtttattttaatccaatggttgtcct |
25746778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 42293876 - 42294072
Alignment:
| Q |
22 |
ctttgctctacgaaccataattgttggttaaccacctataaaaattaagctagaaaatctatcctacaaaattcaagatcgaagaaagaggggtctttaa |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
42293876 |
ctttactctacgaaccataattgttggttaactacctataaaaattaagctagaaaatctatcctacaaaattcaaggtcgaagaaagacggg------- |
42293968 |
T |
|
| Q |
122 |
ctaagataaccaaaactgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaagggaagaagataaaaacgggtctt--gttgaga |
219 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| || ||||||| ||||||| |
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| T |
42293969 |
--------------attgtaaatgggtttcaacttgattgaaaaattcatggttgccgaatctggaatggaagaagataagaatgggtctttagttgaga |
42294054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 45432639 - 45432742
Alignment:
| Q |
136 |
actgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaagggaagaagataaaaacgggtctt--gttgagaaaatcaaactatga |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||||| |
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| T |
45432639 |
actgtaaatgggtttcaacttgattgaaaaattcatggctgccggatctggaatggaagaagataagaacgggtctttagttgagaaaaccaaactatga |
45432738 |
T |
|
| Q |
234 |
atgg |
237 |
Q |
| |
|
|||| |
|
|
| T |
45432739 |
atgg |
45432742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 45432593 - 45432638
Alignment:
| Q |
69 |
agctagaaaatctatcctacaaaattcaagatcgaagaaagagggg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45432593 |
agctagaaaatctatcctacaaaattcaaggtcgaagaaagagggg |
45432638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 7588138 - 7588190
Alignment:
| Q |
239 |
tgagaattgtaaggttcagatctgaatagtttattttaatccaacggttgtcct |
292 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
7588138 |
tgagaattgtaaggttca-atcggaagagtttattttaatccaacggttgtcct |
7588190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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