View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16710_low_9 (Length: 239)
Name: NF16710_low_9
Description: NF16710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16710_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 34665415 - 34665218
Alignment:
| Q |
20 |
ctgcaattgtaacagacgaagaagccaaaaatttgaataaactaccaaacttatggaacttagccactgtccatagagttgaagagttaaaatgcctggt |
119 |
Q |
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| T |
34665415 |
ctgcaattgtaacagacgaagaagccaaaaatttgaataaactaccaaacttatggaacttagccactgtccatagagttgaagagttaaaatgcctggt |
34665316 |
T |
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| Q |
120 |
tagaatgcttccaatttgggcatcaggaattctactcataactgcatcatcatctcaacatagttttgtgattgtacaagctcgtacaatggatcgtc |
217 |
Q |
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| T |
34665315 |
tagaatgcttccaatttgggcatcaggaattctactcataactgcatcatcatctcaacatagttttgtgattgtacaagctcgtacaatggatcgtc |
34665218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 34658697 - 34658598
Alignment:
| Q |
65 |
caaacttatggaacttagccactgtccatagagttgaagagttaaaatgcctggttagaatgcttccaatttgggcatcaggaattctactcataactgc |
164 |
Q |
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| T |
34658697 |
caaacttttggaaattagccactgtccatagagttgaggagttaaaatccatcatcagaatccttccaatttcagcatcaggaattttacttatagctgc |
34658598 |
T |
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