View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16711_high_10 (Length: 249)
Name: NF16711_high_10
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16711_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 234
Target Start/End: Complemental strand, 46263490 - 46263263
Alignment:
| Q |
7 |
cgtcataagatttttcatattttcatcgatccttgtattgtgtatatctttgggaagtttttaaaataagatacacaaacgactgcaacattaatctttt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46263490 |
cgtcataagatttttcatattttcatcgatccttgtattgtgtatatctttgggaagtttttaaaataagatacacaaacgactgcaacattaatctttc |
46263391 |
T |
|
| Q |
107 |
ttgatgtcttcacgacttcaggactgcaatctgggcaagattatggtcatattatcagtaatccattatatcaaagattgtgctgcgacgttgttcgtga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46263390 |
ttgatgtcttcacgacttcaggactgcaatctgggcaagattatggtcatattatcagtaatccattatatcaaagattgtgctgcgacgttgttcgtga |
46263291 |
T |
|
| Q |
207 |
tttaatacctaatataagtgtattcttt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46263290 |
tttaatacctaatataagtgtattcttt |
46263263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 46024698 - 46024928
Alignment:
| Q |
7 |
cgtcataagatttttcatattttcatcgatccttgtattgtgtatatctttgggaagtttttaaaataagatacacaaacgactgcaacattaatctttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46024698 |
cgtcataagatttttcatattttcatcgatccttgtattgtgtatatctttgggaagtttttaaaataagatacacaaacgactgcaacattaatctttt |
46024797 |
T |
|
| Q |
107 |
ttgatgtcttcacgacttcaggactgcaatctgggcaagattatggtcatattatcagtaatc---cattatatcaaagattgtgctgcgacgttgttcg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
46024798 |
ttgatgtcttcacgacttcaggactgcaatctgggcaagattatggtcatattatcagtaatccatcattatatcaaagattgtgctgcgacgttgttcg |
46024897 |
T |
|
| Q |
204 |
tgatttaatacctaatataagtgtattcttt |
234 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
46024898 |
tgatttaatacctaatacaagtgtattcttt |
46024928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University