View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16711_high_2 (Length: 517)

Name: NF16711_high_2
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16711_high_2
NF16711_high_2
[»] chr6 (3 HSPs)
chr6 (119-494)||(28979679-28980063)
chr6 (1-123)||(28976117-28976239)
chr6 (196-254)||(28975226-28975284)
[»] chr1 (1 HSPs)
chr1 (46-199)||(37422974-37423126)
[»] chr8 (2 HSPs)
chr8 (38-198)||(6013534-6013692)
chr8 (196-265)||(31468923-31468992)
[»] chr7 (1 HSPs)
chr7 (126-196)||(47799254-47799324)
[»] chr4 (1 HSPs)
chr4 (126-174)||(1013347-1013395)
[»] chr2 (1 HSPs)
chr2 (197-265)||(24385974-24386042)
[»] chr3 (1 HSPs)
chr3 (126-197)||(49144731-49144802)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 119 - 494
Target Start/End: Original strand, 28979679 - 28980063
Alignment:
Q  119 ttcttcttttaatttagtggtaaaaattcaactttccgatggtgggaaaaaactttgcttatccaggctaaatgccacccatttcatagccatatgatct 218  Q
    ||||||||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  28979679 ttcttcttttaatctagtgataaaaattcaacttttcaatggtggaaaaaaactttgcttacccaggctaaatgccacccatttcatagccatgtgatct 28979778  T
Q  219 cttaagagttctgacaacttttagctcattctagcacgtcattcatgnnnnnnngactctatcttgctcaacaagaaataaaaatgatttccaacgattt 318  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||       ||||||||||||||||||||| ||||||||||||||||||||||||    
T  28979779 cttaacagttctgacaacttttagctcattctagcacgtaattcatgaaaaaaagactctatcttgctcaacaaggaataaaaatgatttccaacgattt 28979878  T
Q  319 ttaaacaggtccaaattttttgacattgtttcgcataaagcctttaaggtttatttccgcgtgtggcggttgctgctaagcc--ttt-------aagata 409  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||  |  |||       ||||||    
T  28979879 tttgacaggtctaaattttttgacattgtttcgcataaagcctttaaggtttatttccgcgtgtggtggttgttgctaaaacgatttccaacgaaagata 28979978  T
Q  410 agccaattcaatatggaattattccggctacttcatgtctatgttccagtgggcttggtaatgaagatagtttgatcatctgttc 494  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28979979 agccaattcaatatggaattattctggctacttcaggtctatgttccagtgggcttggtaatgaagatagtttgatcatctgttc 28980063  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 28976117 - 28976239
Alignment:
Q  1 agtatggaggagagttgggatcatgagcttgatgttgtggtaggtgagagatgagagagaataattagggaagatagtatnnnnnnnttcagtgtagaga 100  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||        ||||| |||||||    
T  28976117 agtatggaggagagttgggatcgtgagattgatgtagtggtaggtgagagatgagagagaatagttagggaagatagtacaaaaaaattcagcgtagaga 28976216  T
Q  101 atgcatgataagagcatgttctt 123  Q
    |||||||||||||||||||||||    
T  28976217 atgcatgataagagcatgttctt 28976239  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 28975226 - 28975284
Alignment:
Q  196 cccatttcatagccatatgatctcttaagagttctgacaacttttagctcattctagca 254  Q
    |||||||||||| |||||||  |||||| | ||||||||||||||||||||||||||||    
T  28975226 cccatttcatagtcatatgacttcttaacacttctgacaacttttagctcattctagca 28975284  T

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Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 46 - 199
Target Start/End: Original strand, 37422974 - 37423126
Alignment:
Q  46 gagagatgagagagaataattagggaagatagtatnnnnnnnttcagtgtagagaatgcatgataagagcatgttcttcttttaatttagtggtaaaaat 145  Q
    |||||||||||||||||  ||||||||||||| ||       ||||||||||||| |||||||||||| |||||||||| |||||| |||||||| ||||    
T  37422974 gagagatgagagagaatggttagggaagataggataaaaaa-ttcagtgtagagagtgcatgataagaacatgttcttcgtttaatctagtggtagaaat 37423072  T
Q  146 tcaactttccgatggtgggaaaaaactttgcttatccaggctaaatgccaccca 199  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  37423073 tcaactttcccatggtgggaaaaaactttgcttacccatgctaaatgccaccca 37423126  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 38 - 198
Target Start/End: Original strand, 6013534 - 6013692
Alignment:
Q  38 tggtaggtgagagatgagagagaataattagggaagatagtatnnnnnnnttcagtgtagagaatgcatgataagagcatgttcttcttttaatttagtg 137  Q
    |||| ||||||||||||||||||||  ||||||||||||| ||       ||||||||||||| ||||||||||||  |||||||||||||||| |||||    
T  6013534 tggtgggtgagagatgagagagaatggttagggaagataggataaaaaa-ttcagtgtagagagtgcatgataagaatatgttcttcttttaatctagtg 6013632  T
Q  138 gtaaaaattcaactttccgatggtgggaaaaaactttgcttatccaggctaaatgccaccc 198  Q
    ||| |||||||||||||| |||||||||||||||||||||||   |||||||||| |||||    
T  6013633 gtagaaattcaactttcc-atggtgggaaaaaactttgcttacataggctaaatgacaccc 6013692  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 31468923 - 31468992
Alignment:
Q  196 cccatttcatagccatatgatctcttaagagttctgacaacttttagctcattctagcacgtcattcatg 265  Q
    ||||||||||| |||||||  ||||||| | ||| ||||||||| |||||||| ||||| || |||||||    
T  31468923 cccatttcataaccatatgtcctcttaacacttccgacaactttcagctcattatagcatgtaattcatg 31468992  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 47799324 - 47799254
Alignment:
Q  126 tttaatttagtggtaaaaattcaactttccgatggtgggaaaaaactttgcttatccaggctaaatgccac 196  Q
    |||||| || ||||||||||  |||||||| ||| |||||||||||||  |||| ||||||||||||||||    
T  47799324 tttaatctaatggtaaaaatcaaactttcccatgatgggaaaaaacttcacttacccaggctaaatgccac 47799254  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 1013395 - 1013347
Alignment:
Q  126 tttaatttagtggtaaaaattcaactttccgatggtgggaaaaaacttt 174  Q
    |||||| || |||||||||| ||||||||| ||||||||||||||||||    
T  1013395 tttaatctaatggtaaaaatccaactttcctatggtgggaaaaaacttt 1013347  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 24385974 - 24386042
Alignment:
Q  197 ccatttcatagccatatgatctcttaagagttctgacaacttttagctcattctagcacgtcattcatg 265  Q
    ||||||||||||||||| | ||||||| | |||| |||||||| | |||||||||||| || |||||||    
T  24385974 ccatttcatagccatataacctcttaacacttctaacaactttcaactcattctagcatgtaattcatg 24386042  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 49144802 - 49144731
Alignment:
Q  126 tttaatttagtggtaaaaattcaactttccgatggtgggaaaaaactttgcttatccaggctaaatgccacc 197  Q
    |||||| || || ||||||||||||||| | ||| |||||||||||||  |||| | |||||||||||||||    
T  49144802 tttaatctaatgataaaaattcaacttttctatgttgggaaaaaacttcacttacctaggctaaatgccacc 49144731  T

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