View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16711_high_3 (Length: 512)
Name: NF16711_high_3
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16711_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Complemental strand, 16236940 - 16236455
Alignment:
| Q |
19 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16236940 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
16236841 |
T |
|
| Q |
119 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16236840 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
16236741 |
T |
|
| Q |
219 |
gcatccacataaaatgttttatacgttcaggtgcactaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgacagcatatg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16236740 |
gcatccacataaaatgctttatacgttcaggtgctctaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaattttgacagcatatg |
16236641 |
T |
|
| Q |
319 |
ataagctgatgcaattgtgaatttcccattagaagaacccgaccacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctc |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16236640 |
ataagctgatgcaattgtgaattttccattagaagaacccgaccacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctc |
16236541 |
T |
|
| Q |
419 |
tgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16236540 |
tgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctc |
16236455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 32714412 - 32714897
Alignment:
| Q |
19 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32714412 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
32714511 |
T |
|
| Q |
119 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32714512 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
32714611 |
T |
|
| Q |
219 |
gcatccacataaaatgttttatacgttcaggtgcactaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgacagcatatg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32714612 |
gcatccacataaaatgctttatacgttcaggtgctctaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaattttgacagcatatg |
32714711 |
T |
|
| Q |
319 |
ataagctgatgcaattgtgaatttcccattagaagaacccgaccacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctc |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32714712 |
ataagctgatgcaattgtgaattttccattagaagaacccgaccacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctc |
32714811 |
T |
|
| Q |
419 |
tgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctc |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32714812 |
tgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccataaaaatcaaccagatctgcaaccttcatctc |
32714897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 372
Target Start/End: Complemental strand, 158883 - 158745
Alignment:
| Q |
234 |
gttttatacgttcaggtgcactaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaat |
333 |
Q |
| |
|
|||| ||||||| ||| || ||| ||||||| ||||| ||||||||| ||||||| || |||| ||||| ||||||| || || |||| ||| ||||| |
|
|
| T |
158883 |
gtttaatacgttgaggagctctactcttccagaacttcaaccaaatcgcatcttgaacaacattatcaaagtttgacatcacattataaattgaagcaat |
158784 |
T |
|
| Q |
334 |
tgtgaatttcccattagaagaacccgaccacatttgctt |
372 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
158783 |
tgtgaattttccattagtagaacccgaccacatttgctt |
158745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 342
Target Start/End: Complemental strand, 159049 - 158887
Alignment:
| Q |
180 |
tatgcttcctcaaatttgttaacaatcttccatggtagagcatccacataaaatgttttatacgttcaggtgcactaatcttccacaactttaaccaaat |
279 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||| ||||| ||| |||||||| ||||||| ||| || ||| ||||||| | ||| |||||||| |
|
|
| T |
159049 |
tatgcttcctcgaatttgttaacaatctttcataatagaacatccccatgaaatgtttaatacgttgaggagctctactcttccagagcttcaaccaaat |
158950 |
T |
|
| Q |
280 |
ctcatcttgtgcatcattgtcaaaatttgacagcatatgataagctgatgcaattgtgaattt |
342 |
Q |
| |
|
| ||||||| | |||| ||||| ||||||| || || ||||| ||| |||||||||||||| |
|
|
| T |
158949 |
cacatcttgaagaacattatcaaagtttgacatcacattataagttgaagcaattgtgaattt |
158887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 28575504 - 28575989
Alignment:
| Q |
19 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575504 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
28575603 |
T |
|
| Q |
119 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575604 |
tgaatttcagcctcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
28575703 |
T |
|
| Q |
219 |
gcatccacataaaatgttttatacgttcaggtgcactaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgacagcatatg |
318 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28575704 |
gcatccacataaaatgctttatacgttcaggtgctctaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaattttgacagcatatg |
28575803 |
T |
|
| Q |
319 |
ataagctgatgcaattgtgaatttcccattagaagaacccgaccacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctc |
418 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575804 |
ataagctgatgcaattgtgaattttccattagaagaacccgaccacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctc |
28575903 |
T |
|
| Q |
419 |
tgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctc |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575904 |
tgaacaacatcataaggcaaccattgattcaacaattcaaaattccaattaccattaaaatcaaccagatctgcaaccttcatctc |
28575989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 20633696 - 20634018
Alignment:
| Q |
19 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633696 |
aatccaactagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
20633795 |
T |
|
| Q |
119 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
20633796 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttgacaatcttccatggtaga |
20633895 |
T |
|
| Q |
219 |
gcatccacataaaatgttttatacgttcaggtgcactaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgacagcatatg |
318 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633896 |
gcatcgacataaaatgttttatacgttcaggtgctctaatattccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgacagcatatg |
20633995 |
T |
|
| Q |
319 |
ataagctgatgcaattgtgaatt |
341 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
20633996 |
ataagctgatgcaattgtgaatt |
20634018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 336
Target Start/End: Original strand, 38836190 - 38836496
Alignment:
| Q |
19 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38836190 |
aatccaactagataaatcaccttcaaagaaacttgttcttgcagcattgtccactgcacacaatcaaagtgccgtggcttttggacagtccctcaaaaca |
38836289 |
T |
|
| Q |
119 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38836290 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
38836389 |
T |
|
| Q |
219 |
gcatccacataaaatgttttatacgttcaggtgcactaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgacagcatatg |
318 |
Q |
| |
|
|||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
38836390 |
gcattcacataaaatgttttatacg-----------tattcttccacaactttaatcaaatctcatcttgtgcagcattgtcaaaatttgacagtatatg |
38836478 |
T |
|
| Q |
319 |
ataagctgatgcaattgt |
336 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
38836479 |
ataagctgatgcaattgt |
38836496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 18568380 - 18568090
Alignment:
| Q |
19 |
aatccaattagataaatcaccttcaaagaaacttgttcttgcagcattgtccactacacacaaccaaagtgccgtggcttttggacagtccctcaaaaca |
118 |
Q |
| |
|
|||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||| |||| | |||||| |||||||||||| ||| |
|
|
| T |
18568380 |
aatccaatgcgataaaccaccttcaaa-aaacttgttcttgcagcaaagtccactacacacaacgaaattgccatcgcttttagacagtccctcagtaca |
18568282 |
T |
|
| Q |
119 |
tgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaatttgttaacaatcttccatggtaga |
218 |
Q |
| |
|
| ||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
18568281 |
taaatttcagactcaatctgatcatgacaaaacctacacatttgattaccaatccacatcttatgcttcctcaa-tttgttaacaatcttccatgataga |
18568183 |
T |
|
| Q |
219 |
gcatccacataaaatgttttatacgttcaggtgcactaatcttccacaactttaaccaaatctcatcttgtgcatcattgtcaaaatttgaca |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| | |||| |||||||||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
18568182 |
gcttccacataaaatgttttatacgttcaggtactctaaacttccacaactttaactaagtctcatcttgtgcaacattgtcaaaatttgaca |
18568090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 360 - 498
Target Start/End: Complemental strand, 18568087 - 18567949
Alignment:
| Q |
360 |
accacatttgcttgtcatttccatcattctcatccggcaccgcaatggtcatgatcctctgaacaacatcataaggcaaccattgattcaacaattcaaa |
459 |
Q |
| |
|
|||||||||| || | ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| || || |
|
|
| T |
18568087 |
accacatttgtttatgattaccatcattctcattacgcaccgcaatggtcatgatcctttgaacaacatcataaggcaactattgattcaacatatccaa |
18567988 |
T |
|
| Q |
460 |
attccaattaccattaaaatcaaccagatctgcaacctt |
498 |
Q |
| |
|
||||| ||| ||||| |||||||||| ||||||||||| |
|
|
| T |
18567987 |
attccgatttccattgaaatcaaccaactctgcaacctt |
18567949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 249
Target Start/End: Complemental strand, 5699049 - 5698895
Alignment:
| Q |
95 |
gcttttggacagtccctcaaaacatgaatttcagactcaatctcatcatgacagaacctacacataggattaccaatccccatcttatgcttcctcaaat |
194 |
Q |
| |
|
||||||||||| || || ||||||||||| |||||||||||| |||||||||| || |||||||| ||| | ||||||||||||||| | ||||||||| |
|
|
| T |
5699049 |
gcttttggacaatctcttaaaacatgaatctcagactcaatcacatcatgacaaaaactacacattggacttccaatccccatcttactcctcctcaaat |
5698950 |
T |
|
| Q |
195 |
ttgttaacaatcttccatggtagagcatccacataaaatgttttatacgttcagg |
249 |
Q |
| |
|
||||| |||||||||||| || | |||||||||||| ||| | ||||||||| |
|
|
| T |
5698949 |
atgttagcaatcttccatgatatataatccacataaaaaatttaacacgttcagg |
5698895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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