View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16711_high_5 (Length: 466)
Name: NF16711_high_5
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16711_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 43598629 - 43599070
Alignment:
| Q |
1 |
accgttaatttaagcatgcacgtccatttcttacagtttctaaatatatgcaacaaattaatcaatgattttatgtttgtaattttatcaggtgattgcc |
100 |
Q |
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| T |
43598629 |
accgttaatttaagcatgcacgtccatttcttacagtttcttaatatatgcaacaaattaatcaatgattttatgtttgtaattttatcaggtgattgcc |
43598728 |
T |
|
| Q |
101 |
acatttactgcaattggaatcatctttatccctattggtcttgcatcattgttttcatcagggaaggtaatgaacataacaatgtatagaatgaaattaa |
200 |
Q |
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| T |
43598729 |
acatttactgcaattggaataatctttatccctattggtcttgcatcattgttttcatcagggaaggtaatgaacataacaatgtatagaatgaaattaa |
43598828 |
T |
|
| Q |
201 |
gttttggtagtgaattttatttataatgataaagaaatactaatgcaggtggtggaagctgaattcagatatgatgaaacgtgtctttctccggatgttg |
300 |
Q |
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| T |
43598829 |
gttttggtactgaattttatttataatgataaagaaatactaatgcaggtggtggaagctgaattcagatatgatgaaacgtgtctttctccggatgttg |
43598928 |
T |
|
| Q |
301 |
ctaaagatgcagttgcatatattaaaagtgataccactaacaagacttgcacccacaaatggattgttagtacattcacttctgtttcacaagagtttca |
400 |
Q |
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| T |
43598929 |
ctaaagatgcagttgcatatattaaaagtgataccactaacaagacttgcacccacaaatggattgttagtacattcacttctgtttcacaaggg----- |
43599023 |
T |
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| Q |
401 |
tttttcatttttatacctaaatggaaataataattagttataaatttta |
449 |
Q |
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| T |
43599024 |
--tttcatttttatacctaaatggaaataataattagttataaatttta |
43599070 |
T |
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