View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16711_low_11 (Length: 250)
Name: NF16711_low_11
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16711_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11767251 - 11767486
Alignment:
| Q |
1 |
ccaaactaattaatattatttattgtttagatgaataaatatttgaatgactttggtaactaagtagaaagtaatgatgaagaataataaaaactcgaag |
100 |
Q |
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| T |
11767251 |
ccaaactaattaatattatttattgtttagatgaataaatatttgaatgactttggtaactaagtagaaagtaatgatgaagaataataaaaactcgaag |
11767350 |
T |
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| Q |
101 |
atgtaaaccaatgaagataggtctagaatcacggtttaacggaattcctttattttattcaataattaatcctcttactaaaactattaacatgttggta |
200 |
Q |
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| T |
11767351 |
atgtaaatcaatgaagataggtctagaatcacggtttaacggaattcctttattttattcaataattaatcctcttactaaaactattaacatgttggtc |
11767450 |
T |
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| Q |
201 |
attcgagactaatattatttttcctcaattaacatt |
236 |
Q |
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| T |
11767451 |
attcgagactaatattatttttcctcaattaacatt |
11767486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 37470288 - 37470411
Alignment:
| Q |
3 |
aaactaattaatatta-tttattgtttagatgaataaatatttgaatgactttggtaactaagtagaaagtaatgatgaagaataataaaaactcgaaga |
101 |
Q |
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| T |
37470288 |
aaactaattaagattactttattatttagacgaacaagtagtagaatgt-tttggtaactaagtaaaaagaaatgacgaagaagcataaaagtgcgaaga |
37470386 |
T |
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| Q |
102 |
tgtaaaccaatgaagataggtctag |
126 |
Q |
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| T |
37470387 |
tgtaaatcaatggagagaggtctag |
37470411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 48180231 - 48180324
Alignment:
| Q |
143 |
aattcctttatttt-attcaataattaatcctcttactaaaactattaacatg-ttggtaattcgagactaatattatttttcctcaattaaca |
234 |
Q |
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| T |
48180231 |
aattcctttatttttattcaatcatcaatccctttactaaaactattaatatgtttggttatttgtgattaatcttctttttcctgaattaaca |
48180324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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