View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16711_low_13 (Length: 233)

Name: NF16711_low_13
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16711_low_13
NF16711_low_13
[»] chr2 (2 HSPs)
chr2 (1-217)||(13882004-13882220)
chr2 (1-217)||(14022129-14022345)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 13882220 - 13882004
Alignment:
Q  1 ggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttggtatacttgttagagtctaaggggactaaatccattttacatggatatccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13882220 ggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttgatatacttgttagagtctaaggggactaaacccattttacatggatatccaa 13882121  T
Q  101 tagtagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaatg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882120 tagcagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaatg 13882021  T
Q  201 tcaaattgagttatact 217  Q
    |||||||||||||||||    
T  13882020 tcaaattgagttatact 13882004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 14022345 - 14022129
Alignment:
Q  1 ggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttggtatacttgttagagtctaaggggactaaatccattttacatggatatccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14022345 ggttcaaatattcaatttatttctcaaaaacgatcaagtttttccttgatatacttgttagagtctaaggggactaaacccattttacatggatatccaa 14022246  T
Q  101 tagtagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaatg 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14022245 tagcagtccaatattttatcattttatactataattttaagatgtagttataaaagtgaaacgatatagcaaaagaatgaacatacattaagtattaatg 14022146  T
Q  201 tcaaattgagttatact 217  Q
    |||||||||||||||||    
T  14022145 tcaaattgagttatact 14022129  T

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