View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16711_low_5 (Length: 472)
Name: NF16711_low_5
Description: NF16711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16711_low_5 |
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| [»] scaffold0005 (2 HSPs) |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 32146295 - 32145848
Alignment:
| Q |
13 |
aatattatagcaagtatcgttatcacttaacaagcatggcataagagggcataaatcacatcgtgtaaaacttgataattgtgtcttccttcgtagcaac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
32146295 |
aatattatagcaagtatcgttatcacttaacaagcatggcataagagggcatgaatcacatcgtgtaaaacttgataattgtgtcttccttcataacaac |
32146196 |
T |
|
| Q |
113 |
actgctaacttcaagggtggattctttcaatttcctctttaacttatatgtatatc--ttag----acatacattattgcataacataaatcatgaagga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
32146195 |
actgctaacttcaagggtggattctttcaatttcctctttaacttatatgtatatcgattagacatacatacattattgcataacataaatcatgaagga |
32146096 |
T |
|
| Q |
207 |
ttcttgacccacatgacaacatcttttccctcatttccaagaatactgaacttgaatcttcagagcttcatatccgcataaagcctgagtattgccatct |
306 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
32146095 |
ttcttgacccacatgacaacatcttctccctcatttccaagaatactgaacttgaatcttcagagcttcatatccggataaagcctaagtattgccatct |
32145996 |
T |
|
| Q |
307 |
tctcttgagcagtacctatttcttcgaacatcggttattacacttgatgacttgaacgttaccctgattaccatactagaggcgaattccaatctctcat |
406 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145995 |
tctcctgagcagtacctatttattcgaacatcggttattacacttgacgacttgaacgttaccctgattaccatactagaggcgaattccaatctctcat |
32145896 |
T |
|
| Q |
407 |
aacttacttatgtaaagatacgtccatcctattcttaccatgcttttc |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145895 |
aacttacttatgtaaagatacgtccatcctattcttaccatgcttttc |
32145848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 1353 - 1138
Alignment:
| Q |
13 |
aatattatagcaagtatcgttatcacttaacaagcatggcataagagggcataaatcacatcgtgtaaaacttgataattgtgtcttccttcgtagcaac |
112 |
Q |
| |
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||||| || ||||||||| ||||||||||||||| |||||||||||| | || |||| ||||||| |||||| | | |||||||||||||| | |
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| T |
1353 |
aatatcatggcaagtatcattatcacttaacaagtatggcataagagagtatgaatcgcatcgtgcgaaacttactgaccgtgtcttccttcgtgataca |
1254 |
T |
|
| Q |
113 |
actgctaacttcaagggtggattctttcaatttcctctttaacttatatgtatatcttagacatacattattgcataacataaatcatgaaggattcttg |
212 |
Q |
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||| |||||| | ||||| || ||| || | | |||||||||||||||||| || ||||| |||||| |||||||||||||||||| | || ||| |
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| T |
1253 |
actctcaacttc-ggagtggagtc-ttccatattcactttaacttatatgtatacctcagacagacattactgcataacataaatcatgtggaatcgttg |
1156 |
T |
|
| Q |
213 |
acccacatgacaacatct |
230 |
Q |
| |
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|| |||||||| |||||| |
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|
| T |
1155 |
actcacatgacgacatct |
1138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 21333102 - 21333021
Alignment:
| Q |
149 |
ctttaacttatatgtatatcttagacatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct |
230 |
Q |
| |
|
|||||||||||||||||| || ||||| |||||| ||| |||||||||||||| | || |||||| |||||||| |||||| |
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| T |
21333102 |
ctttaacttatatgtatacctcagacagacattactgcgtaacataaatcatgtggaatccttgactcacatgacgacatct |
21333021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 156 - 373
Target Start/End: Original strand, 19472 - 19689
Alignment:
| Q |
156 |
ttatatgtatatcttagacatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct-tttccctcatttccaagaatactg |
254 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| ||| ||| ||| | ||||| |
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| T |
19472 |
ttatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgttt-caaaagtactg |
19570 |
T |
|
| Q |
255 |
aacttgaatcttcagagcttcatatccgcataaagcctgagtattgccatcttctcttgagcagtacctatttcttcgaacatcggttattacacttgat |
354 |
Q |
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|||||||||||||||| |||||||| || |||| || |||||||| ||||||||| ||| ||||||| ||| |||| | | | ||||||||||||||| |
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| T |
19571 |
aacttgaatcttcagaacttcatattcggataaggctcgagtattgtcatcttctcctgactagtacctctttattcggataccagttattacacttgat |
19670 |
T |
|
| Q |
355 |
gacttgaacgttaccctga |
373 |
Q |
| |
|
|||| || | ||||||||| |
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| T |
19671 |
gactcgatcattaccctga |
19689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 19333 - 19392
Alignment:
| Q |
13 |
aatattatagcaagtatcgttatcacttaacaagcatggcataagagggcataaatcaca |
72 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |||||||||| || ||||||| |
|
|
| T |
19333 |
aatattatggcaagtatcattatcacttaacaagcataacataagagggtatgaatcaca |
19392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 156 - 373
Target Start/End: Complemental strand, 14820240 - 14820023
Alignment:
| Q |
156 |
ttatatgtatatcttagacatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct-tttccctcatttccaagaatactg |
254 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| ||| ||| ||| | ||||| |
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| T |
14820240 |
ttatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgttt-caaaagtactg |
14820142 |
T |
|
| Q |
255 |
aacttgaatcttcagagcttcatatccgcataaagcctgagtattgccatcttctcttgagcagtacctatttcttcgaacatcggttattacacttgat |
354 |
Q |
| |
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|||||||||||||||| |||||||| || |||| || |||||||| ||||||||| ||| ||||||| ||| |||| | | | ||||||||||||||| |
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|
| T |
14820141 |
aacttgaatcttcagaacttcatattcggataaggctcgagtattgtcatcttctcctgactagtacctctttattcggataccagttattacacttgat |
14820042 |
T |
|
| Q |
355 |
gacttgaacgttaccctga |
373 |
Q |
| |
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|||| || | ||||||||| |
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| T |
14820041 |
gactcgatcattaccctga |
14820023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 14820379 - 14820320
Alignment:
| Q |
13 |
aatattatagcaagtatcgttatcacttaacaagcatggcataagagggcataaatcaca |
72 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| |||||||||| || ||||||| |
|
|
| T |
14820379 |
aatattatggcaagtatcattatcacttaacaagcataacataagagggtatgaatcaca |
14820320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 12058744 - 12058693
Alignment:
| Q |
13 |
aatattatagcaagtatcgttatcacttaacaagcatggcataagagggcat |
64 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
12058744 |
aatattatagcaagtatcgttatcacttaacaagcatgacataagagggcat |
12058693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 15559549 - 15559479
Alignment:
| Q |
13 |
aatattatagcaagtatcgttatcacttaacaagcatggcataagagggcataaatcacatcgtgtaaaac |
83 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||| ||||||||||||||||| || ||||||||| || ||||| |
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|
| T |
15559549 |
aatattatggcaagtatcattatcatttaacgagcatggcataagagggtatgaatcacatcttgcaaaac |
15559479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 2783 - 2736
Alignment:
| Q |
22 |
gcaagtatcgttatcacttaacaagcatggcataagagggcataaatc |
69 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| || ||||||| |
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|
| T |
2783 |
gcaagtatcattatcacttaaaaagcatggcataagaaggtataaatc |
2736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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